Research ExplorerScientific StaffRene Werner Publications

Dr.rer.nat. ID: 41291

Rene Werner

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Publications

  1. 2024

  2. Benchmarking machine learning-based real-time respiratory signal predictors in 4D SBRT

    Wimmert, L., Nielsen, M., Madesta, F., Gauer, T., Hofmann, C. & Werner, R., 05.2024, In: MED PHYS. 51, 5, p. 3173-3183 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  3. Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images

    Madesta, F., Sentker, T., Gauer, T. & Werner, R., 05.2024, In: MED PHYS. 51, 5, p. 3437-3454 18 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  4. Spatial normalization for voxel-based lesion symptom mapping: impact of registration approaches

    Jühling, D., Rajashekar, D., Cheng, B., Hilgetag, C. C., Forkert, N. D. & Werner, R., 17.01.2024, In: FRONT NEUROSCI-SWITZ. 18, p. 1296357

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  5. DARTS: an open-source Python pipeline for Ca2+ microdomain analysis in live cell imaging data

    Woelk, L-M., Kovacevic, D., Husseini, H., Förster, F., Gerlach, F., Möckl, F., Altfeld, M., Guse, A. H., Diercks, B-P. & Werner, R., 11.01.2024, In: FRONT IMMUNOL. 14, p. 1299435

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  6. Deep Image Prior for Spatio-temporal Fluorescence Microscopy Images: DECO-DIP

    Meyer, L., Woelk, L-M., Gee, C., Lohr, C., Arcot Kannabiran, S., Diercks, B-P. & Werner, R., 2024, Bildverarbeitung für die Medizin 2024: Proceedings, German Conference on Medical Image Computing, Erlangen, March 10–12, 2024. Maier, A., Deserno, TM., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, TM. (eds.). 1 ed. Springer Vieweg, p. 322-327 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  7. Time-resolved role of P2X4 and P2X7 during CD8+ T cell activation

    Brock, V. J., Lory, N. C., Möckl, F., Birus, M., Stähler, T., Woelk, L-M., Jaeckstein, M., Heeren, J., Koch-Nolte, F., Rissiek, B., Mittrücker, H-W., Guse, A. H., Werner, R. & Diercks, B-P., 2024, In: FRONT IMMUNOL. 15, p. 1258119

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  8. 2023

  9. Dose reduction in sequence scanning 4D CT imaging through respiratory signal-guided tube current modulation: A feasibility study

    Schwarz, A., Werner, R., Wimmert, L., Vornehm, M., Gauer, T. & Hofmann, C., 12.2023, In: MED PHYS. 50, 12, p. 7539-7547 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  10. Self-Supervision for Medical Image Classification: State-of-the-Art Performance with ~100 Labeled Training Samples per Class

    Nielsen, M., Wenderoth, L., Sentker, T. & Werner, R., 28.07.2023, In: BIOENGINEERING-BASEL. 10, 8, 14 p., 895.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  11. Clinical application of breathing-adapted 4D CT: image quality comparison to conventional 4D CT

    Werner, R., Szkitsak, J., Madesta, F., Büttgen, L., Wimmert, L., Sentker, T., Fietkau, R., Haderlein, M., Bert, C., Gauer, T. & Hofmann, C., 07.2023, In: STRAHLENTHER ONKOL. 199, 7, p. 686-691 6 p.

    Research output: SCORING: Contribution to journal › Short publication › Research › peer-review

  12. Adhesion to laminin-1 and collagen IV induces the formation of Ca2+ microdomains that sensitize mouse T cells for activation

    Weiß, M., Hernandez, L. C., Gil Montoya, D. C., Löhndorf, A., Krüger, A., Kopdag, M., Uebler, L., Landwehr, M., Nawrocki, M., Huber, S., Woelk, L-M., Werner, R., Failla, A. V., Flügel, A., Dupont, G., Guse, A. H. & Diercks, B-P., 20.06.2023, In: SCIENCE SIGNALING. 16, 790, p. eabn9405

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  13. Extending Tempcyclegan for Virtual Augmentation of Gastrointestinal Endoscopy Training Simulators

    Wallrodt, M., Schulz-Alsen, M., Ehlken, H., Rösch, T., Schmitz, R. & Werner, R., 02.06.2023, Bildverarbeitung für die Medizin 2023: Proceedings, German Workshop on Medical Image Computing, Braunschweig, July 2-4, 2023. Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 3-8 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  14. Label Efficient Classification in Liquid Biopsy Data by Self-supervision

    Husseini, H., Nielsen, M., Pantel, K., Wikman, H., Riethdorf, S. & Werner, R., 02.06.2023, Bildverarbeitung für die Medizin 2023: Proceedings, German Workshop on Medical Image Computing, Braunschweig, July 2-4, 2023. Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 261-266 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  15. Discordant and Converting Receptor Expressions in Brain Metastases from Breast Cancer: MRI-Based Non-Invasive Receptor Status Tracking

    Heitkamp, A., Madesta, F., Amberg, S., Wahaj, S., Schröder, T., Bechstein, M., Meyer, L., Broocks, G., Hanning, U., Gauer, T., Werner, R., Fiehler, J., Gellißen, S. & Kniep, H. C., 23.05.2023, In: CANCERS. 15, 11, 2880.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  16. 2022

  17. Dekonvolution von Mikroskopiedaten bei niedrigem Signal-Rausch-Verhältnis

    Woelk, L-M., Diercks, B-P. & Werner, R., 11.2022, In: BIOspektrum. 2022, 28, p. 720-722

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  18. Evaluation of magnetic resonance imaging-based radiomics characteristics for differentiation of benign and malignant peripheral nerve sheath tumors in neurofibromatosis type 1

    Ristow, I., Madesta, F., Well, L., Shenas, F. Y., Wright, F., Molwitz, I., Farschtschi, S., Bannas, P., Adam, G., Mautner, V. F., Werner, R. & Salamon, J., 03.10.2022, In: NEURO-ONCOLOGY. 24, 10, p. 1790-1798 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  19. Reinforcement learning-basierte Patchpriorisierung zur beschleunigten Segmentierung von hochauflösenden Endoskopievideodaten

    Schüttler, S., Madesta, F., Rösch, T., Werner, R. & Schmitz, R., 05.04.2022, Informatik aktuell: Bildverarbeitung für die Medizin. Klaus, M-H., Deserno, T. M., Handels, H., Maier, A., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Wiesbaden: Springer Vieweg, p. 339-344 6 p. (Bildverarbeitung für die Medizin 2022).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  20. Artificial intelligence in GI endoscopy: stumbling blocks, gold standards and the role of endoscopy societies

    Schmitz, R., Werner, R., Repici, A., Bisschops, R., Meining, A., Zornow, M., Messmann, H., Hassan, C., Sharma, P. & Rösch, T., 03.2022, In: GUT. 71, 3, p. 451-454 4 p.

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  21. P2X4 and P2X7 are essential players in basal T cell activity and Ca2+ signaling milliseconds after T cell activation

    Brock, V. J., Wolf, I. M. A., Er-Lukowiak, M., Lory, N., Stähler, T., Woelk, L-M., Mittrücker, H-W., Müller, C. E., Koch-Nolte, F., Rissiek, B., Werner, R., Guse, A. H. & Diercks, B-P., 04.02.2022, In: SCI ADV. 8, 5, eabl9770.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  22. 2021

  23. Dual NADPH oxidases DUOX1 and DUOX2 synthesize NAADP and are necessary for Ca2+ signaling during T cell activation

    Gu, F., Krüger, A., Roggenkamp, H. G., Alpers, R., Lodygin, D., Jaquet, V., Möckl, F., Hernandez C, L. C., Winterberg, K., Bauche, A., Rosche, A., Grasberger, H., Kao, J. Y., Schetelig, D., Werner, R., Schröder, K., Carty, M., Bowie, A. G., Huber, S., Meier, C., Mittrücker, H-W., Heeren, J., Krause, K-H., Flügel, A., Diercks, B-P. & Guse, A. H., 16.11.2021, In: SCIENCE SIGNALING. 14, 709, eabe3800.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  24. Deep Learning-Based Automated Thrombolysis in Cerebral Infarction Scoring: A Timely Proof-of-Principle Study

    Nielsen, M., Waldmann, M., Frölich, A. M., Flottmann, F., Hristova, E., Bendszus, M., Seker, F., Fiehler, J., Sentker, T. & Werner, R., 11.2021, In: STROKE. 52, 11, p. 3497-3504 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  25. Time-Dependent Image Restoration of Low-SNR Live-Cell Ca2+ Fluorescence Microscopy Data

    Woelk, L-M., Kannabiran, S. A., Brock, V. J., Gee, C. E., Lohr, C., Guse, A. H., Diercks, B-P. & Werner, R., 30.10.2021, In: INT J MOL SCI. 22, 17 p., 11792.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  26. First clinical evaluation of breathing controlled four-dimensional computed tomography imaging

    Szkitsak, J., Werner, R., Fernolendt, S., Schwarz, A., Ott, O. J., Fietkau, R., Hofmann, C. & Bert, C., 10.2021, In: PHYS IMAG RADIAT ONC. 20, p. 56-61 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  27. Multi-scale fully convolutional neural networks for histopathology image segmentation: From nuclear aberrations to the global tissue architecture

    Schmitz, R., Madesta, F., Nielsen, M., Krause, J., Steurer, S., Werner, R. & Rösch, T., 05.2021, In: MED IMAGE ANAL. 70, p. 101996 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  28. Spatio-temporal feature learning with reservoir computing for T-cell segmentation in live-cell Ca2+ fluorescence microscopy

    Hadaeghi, F., Diercks, B-P., Schetelig, D., Damicelli, F., Wolf, I. M. A. & Werner, R., 15.04.2021, In: SCI REP-UK. 11, 1, 8233.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  29. HN1L/JPT2: A signaling protein that connects NAADP generation to Ca2+ microdomain formation

    Roggenkamp, H. G., Khansahib, I., Hernandez C, L. C., Zhang, Y., Lodygin, D., Krüger, A., Gu, F., Möckl, F., Löhndorf, A., Wolters, V., Woike, D., Rosche, A., Bauche, A., Schetelig, D., Werner, R., Schlüter, H., Failla, A. V., Meier, C., Fliegert, R., Walseth, T. F., Flügel, A., Diercks, B-P. & Guse, A. H., 23.03.2021, In: SCI SIGNAL. 14, 675

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  30. Comparison of intelligent 4D CT sequence scanning and conventional spiral 4D CT: a first comprehensive phantom study

    Werner, R., Szkitsak, J., Sentker, T., Madesta, F., Schwarz, A., Fernolendt, S., Vornehm, M., Gauer, T., Bert, C. & Hofmann, C., 08.01.2021, In: PHYS MED BIOL. 66, 1, 10 p., 015004.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  31. PAIP 2019: Liver cancer segmentation challenge

    Kim, Y. J., Jang, H., Lee, K., Park, S., Min, S-G., Hong, C., Park, J. H., Lee, K., Kim, J., Hong, W., Jung, H., Liu, Y., Rajkumar, H., Khened, M., Krishnamurthi, G., Yang, S., Wang, X., Han, C. H., Kwak, J. T., Ma, J., Tang, Z., Marami, B., Zeineh, J., Zhao, Z., Heng, P-A., Schmitz, R., Madesta, F., Rösch, T., Werner, R., Tian, J., Puybareau, E., Bovio, M., Zhang, X., Zhu, Y., Chun, S. Y., Jeong, W-K., Park, P. & Choi, J., 01.2021, In: MED IMAGE ANAL. 67, p. 101854 16 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  32. Reduktion der Kalibrierungszeit für die Magnetpartikelbildgebung mittels Deep Learning

    Baltruschat, I. M., Szwargulski, P., Griese, F., Grosser, M., Werner, R. & Knopp, T., 2021, Bildverarbeitung für die Medizin 2021 - Proceedings, German Workshop on Medical Image Computing, 2021. Palm, C., Handels, H., Maier-Hein, K., Deserno, T. M., Maier, A. & Tolxdorff, T. (eds.). Springer Science and Business Media Deutschland GmbH, p. 337 1 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › Conference contribution - Article for conference › Research › peer-review

  33. Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy

    Li, D., Wang, G., Werner, R., Xie, H., Guan, J-S. & Hilgetag, C-C., 2021, In: FRONT NEUROINFORM. 15, p. 674439 674439.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  34. 2020

  35. Digital Health meets Hamburg integrated medical degree program iMED: Concept and introduction of the new interdisciplinary 2nd track Digital Health

    Werner, R., Henningsen, M., Schmitz, R., Guse, A. H., Augustin, M. & Gauer, T., 16.11.2020, In: GMS Journal for Medical Education. 37, 6, p. Doc61 10 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Education › peer-review

  36. Self-contained deep learning-based boosting of 4D cone-beam CT reconstruction

    Madesta, F., Sentker, T., Gauer, T. & Werner, R., 11.2020, In: MED PHYS. 47, 11, p. 5619-5631 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  37. Künstliche Intelligenz in der Medizin

    Werner, R. & Schmitz, R., 21.10.2020, Digitale Medizin. Matusiewicz, D., Henningsen, M. & Ehlers, J. P. (eds.). 1 ed. Medizinisch Wissenschaftliche Verlagsgesellschaft, p. 125-138 14 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  38. 3d-SMRnet: Achieving a New Quality of MPI System Matrix Recovery by Deep Learning

    Baltruschat, I. M., Szwargulski, P. K., Griese, F., Grosser, M., Werner, R. & Knopp, T., 10.2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part II. 1 ed. Springer Nature Switzerland, p. 74-82 9 p. (Lecture Notes in Computer Science (LNCS); no. 12262).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  39. Time Matters: Handling Spatio-Temporal Perfusion Information for Automated TICI Scoring

    Nielsen, M., Waldmann, M., Sentker, T., Frölich, A., Fiehler, J. & Werner, R., 10.2020, MICCAI 2020. 1 ed. Springer Nature Switzerland, Vol. 12266. p. 86-96 11 p. (Lecture Notes in Computer Science (LNCS)).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  40. Widening the Focus: Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies

    Madesta, F., Schmitz, R., Rösch, T. & Werner, R., 10.2020, MICCAI 2020. 1 ed. Springer Nature Switzerland, Vol. 12264. p. 289-298 10 p. (Lecture Notes in Computer Science (LNCS)).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  41. 4D CT image artifacts affect local control in SBRT of lung and liver metastases

    Sentker, T., Schmidt, V., Ozga, A-K., Petersen, C., Madesta, F., Hofmann, C., Werner, R. & Gauer, T., 07.2020, In: RADIOTHER ONCOL. 148, p. 229-234 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  42. Intelligent 4D CT sequence scanning (i4DCT): First scanner prototype implementation and phantom measurements of automated breathing signal-guided 4D CT

    Werner, R., Sentker, T., Madesta, F., Schwarz, A., Vornehm, M., Gauer, T. & Hofmann, C., 06.2020, In: MED PHYS. 47, 6, p. 2408-2412 5 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  43. Technological quality requirements for stereotactic radiotherapy: Expert review group consensus from the DGMP Working Group for Physics and Technology in Stereotactic Radiotherapy

    Schmitt, D., Blanck, O., Gauer, T., Fix, M. K., Brunner, T. B., Fleckenstein, J., Loutfi-Krauss, B., Manser, P., Werner, R., Wilhelm, M-L., Baus, W. W. & Moustakis, C., 05.2020, In: STRAHLENTHER ONKOL. 196, 5, p. 421-443 23 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  44. Reservoir Computing for Jurkat T-cell Segmentation in High Resolution Live Cell Ca2+ Fluorescence Microscopy

    Hadäghi, F., Diercks, B-P., Wolf, I. & Werner, R., 01.04.2020, In: Proc IEEE ISBI 2020. 1, p. 1587-1591 5 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  45. Combining Direct 3D Volume Rendering and Magnetic Particle Imaging to Advance Radiation-Free Real-Time 3D Guidance of Vascular Interventions

    Weller, D., Salamon, J. M., Frölich, A., Möddel, M., Knopp, T. & Werner, R., 02.2020, In: CARDIOVASC INTER RAD. 43, 2, p. 322-330 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  46. Skin Lesion Classification Using CNNs with Patch-Based Attention and Diagnosis-Guided Loss Weighting

    Gessert, N., Sentker, T., Madesta, F., Schmitz, R., Kniep, H., Baltruschat, I., Werner, R. & Schlaefer, A., 02.2020, In: IEEE T BIO-MED ENG. 67, 2, p. 495-503 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  47. Künstliche Intelligenz in der Endoskopie: Neuronale Netze und maschinelles Sehen – Techniken und Perspektiven (reprint Z Gastroenterol 2019; 57(06): 767-780)

    Schmitz, R., Werner, R. & Rösch, T., 2020, In: Endo-Praxis. 2020, 36, p. 30-43

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  48. Skin lesion classification using ensembles of multi-resolution EfficientNets with meta data

    Gessert, N., Nielsen, M., Shaikh, M., Werner, R. & Schlaefer, A., 2020, In: METHODSX. 7, 7, p. 100864 8 p., 100864.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  49. 2019

  50. Intelligent 4D CT sequence scanning (i4DCT): Concept and performance evaluation

    Werner, R., Sentker, T., Madesta, F., Gauer, T. & Hofmann, C., 13.08.2019, In: MED PHYS. 46, 8, p. 3462-3474 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  51. Künstliche Intelligenz in der Endoskopie: Neuronale Netze und maschinelles Sehen – Techniken und Perspektiven

    Schmitz, R., Werner, R. & Rösch, T., 06.2019, In: Z GASTROENTEROL. 57, 6, p. 767-780 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  52. Discrimination of the hierarchical structure of cortical layers in 2-photon microscopy data by combined unsupervised and supervised machine learning

    Li, D., Zavaglia, M., Wang, G., Xie, H., Hu, Y., Werner, R., Guan, J-S. & Hilgetag, C. C., 15.05.2019, In: SCI REP-UK. 9, 1, p. 7424

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  53. Self-consistent deep learning-based boosting of 4D cone-beam computed tomography reconstruction

    Madesta, F., Gauer, T., Sentker, T. & Werner, R., 15.03.2019, Medical Imaging 2019: Image Processing. 1 ed. SPIE , Vol. 10949. p. 1094902 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  54. Toward employing the full potential of magnetic particle imaging: exploring visualization techniques and clinical use cases for real-time 3D vascular imaging

    Werner, R., Weller, D., Salamon, J. M., Möddel, M. & Knopp, T., 15.03.2019, Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging. 1 ed. SPIE , Vol. 10953. p. 109531V 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  55. Patient-specific 4D Monte Carlo dose accumulation using correspondence-model-based motion prediction

    Sentker, T., Madesta, F. & Werner, R., 08.03.2019, Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). 1 ed. SPIE , Vol. 10951. p. 1095109 7 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  56. Machbarkeitsstudie zur CNN-basierten Identifikation und TICI-Klassifizierung zerebraler ischämischer Infarkte in DSA-Daten

    Nielsen, M., Waldmann, M., Frölich, A., Fiehler, J. & Werner, R., 07.02.2019, Bildverarbeitung für die Medizin 2019: Algorithmen – Systeme – Anwendungen. Proceedings des Workshops vom 17. bis 19. März 2019 in Lübeck. 1 ed. Springer Vieweg, p. 200-205 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  57. Radiomics of Brain MRI: Utility in Prediction of Metastatic Tumor Type

    Kniep, H. C., Madesta, F., Schneider, T., Hanning, U., Schönfeld, M. H., Schön, G., Fiehler, J., Gauer, T., Werner, R. & Gellissen, S., 02.2019, In: RADIOLOGY. 290, 2, p. 479-487 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  58. Combining Good Old Random Forest and DeepLabv3+ for ISLES 2018 CT-Based Stroke Segmentation

    Böhme, L., Madesta, F., Sentker, T. & Werner, R., 26.01.2019, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. 1 ed. Springer, p. 335-342 8 p. (Lecture Notes in Computer Science; vol. 11383).

    Research output: SCORING: Contribution to book/anthology › Conference contribution - Article for conference › Research › peer-review

  59. High-Resolution Calcium Imaging Method for Local Calcium Signaling

    Diercks, B-P., Werner, R., Schetelig, D., Wolf, I. & Guse, A., 2019, Calcium-Binding Proteins of the EF-Hand Superfamily. 1 ed. Humana Press, Vol. 1929. p. 27-39 13 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  60. MRI-based field of view selection for precise, real-time targeting in MPI

    Griese, F., Prieske, M., Möddel, M., Werner, R. & Knopp, T., 2019, 9th International Workshop on Magnetic Particle Imaging (IWMPI 2019). p. 207-208

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  61. Wrestling the Devil of Wasting Time: MPI System Matrix Recovery by Deep Learning

    Baltruschat, I. M., Griese, F., Szwargulski, P. K., Werner, R. & Knopp, T., 2019, 9th International Workschop on Magnetic Particle Imaging (IWMPI 2018) . 1 ed. Infinite Science Publishing

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  62. 2018

  63. ORAI1, STIM1/2, and RYR1 shape subsecond Ca2+ microdomains upon T cell activation.

    Diercks, B-P., Werner, R., Weidemüller, P., Czarniak, F., Hernandez, L. C., Lehmann, C., Rosche, A., Krüger, A., Kaufmann, U., Vaeth, M., Failla, A., Zobiak, B., Kandil, F-I., Schetelig, D., Ruthenbeck, A., Meier, C., Lodygin, D., Flügel, A., Ren, D., Wolf, I., Feske, S. & Guse, A., 18.12.2018, In: SCIENCE SIGNALING. 11, 561, p. eaat0358

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  64. A new cerebral vessel benchmark dataset (CAPUT) for validation of image-based aneurysm deformation estimation algorithms

    Schetelig, D., Frölich, A., Knopp, T. & Werner, R., 30.10.2018, In: SCI REP-UK. 8, 1, p. 15999 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  65. GDL-FIRE4D: Deep Learning-based fast 4D CT image registration

    Sentker, T., Madesta, F. & Werner, R., 09.2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). 1 ed. Springer, Vol. 11070. p. 765 - 773 9 p. (Lecture Notes in Computer Science).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  66. Analysis of the influence of imaging-related uncertainties on cerebral aneurysm deformation quantification using a no-deformation physical flow phantom

    Schetelig, D., Sedlacik, J., Fiehler, J., Frölich, A., Knopp, T., Sothmann, T., Waschkewitz, J. & Werner, R., 20.07.2018, In: SCI REP-UK. 8, 1, p. 11004 9 p., 11004.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  67. Influence of deformable image registration on 4D dose simulation for extracranial SBRT: A multi-registration framework study

    Mogadas, N., Sothmann, T., Knopp, T., Gauer, T., Petersen, C. & Werner, R., 05.2018, In: RADIOTHER ONCOL. 127, 2, p. 225-232 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  68. Influence of 4D CT motion artifacts on correspondence model-based 4D dose accumulation

    Sothmann, T., Gauer, T. & Werner, R., 12.03.2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). 1 ed. SPIE , Vol. 10576. p. 105760F-1 - 105760F-7 7 p. 105760F. (Progress in Biomedical Optics and Imaging).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  69. Under-reported dosimetry errors due to interplay effects during VMAT dose delivery in extreme hypofractionated stereotactic radiotherapy

    Gauer, T., Sothmann, T., Blanck, O., Petersen, C. & Werner, R., 01.02.2018, In: STRAHLENTHER ONKOL. 194, 6, p. 570-579

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  70. Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT

    Mogadas, N., Sothmann, T. & Werner, R., 2018, Bildverarbeitung für die Medizin: Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 11. bis 13. März 2018 in Erlangen. Maier, A., Deserno, T., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 188-193 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  71. Self-reference-based and during-registration detection of motion artifacts in spatio-temporal image data

    Mücke, E., Handels, H. & Werner, R., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). 1 ed. SPIE , Vol. 10574. p. 10574-1 - 10574-7 7 p. (Proceedings of SPIE).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  72. Technical considerations for automated low-pitch spiral 4D CT scanning protocol selection

    Werner, R., Sothmann, T., Madesta, F., Gauer, T. & Hofmann, C., 2018, Medical Imaging 2018: Physics of Medical Imaging. Lo, J. Y., Schmidt, T. G. & Chen, G-H. (eds.). 1 ed. SPIE , Vol. 10573. p. 105733Y-1-105733Y-6 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  73. 2017

  74. Correspondence model-based 4D VMAT dose simulation for analysis of local metastasis recurrence after extracranial SBRT

    Sothmann, T., Gauer, T., Wilms, M. & Werner, R., 13.11.2017, In: PHYS MED BIOL. 62, 23, p. 9001-9017

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  75. Subpopulation-based correspondence modelling for improved respiratory motion estimation in the presence of inter-fraction motion variations

    Wilms, M., Werner, R., Yamamoto, T., Handels, H. & Ehrhardt, J., 26.06.2017, In: PHYS MED BIOL. 62, 14, p. 5823-5839 17 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  76. Reduction of breathing irregularity-related motion artifacts in low-pitch spiral 4D CT by optimized projection binning

    Werner, R., Hofmann, C., Mücke, E. & Gauer, T., 19.06.2017, In: RADIAT ONCOL. 12, 1, p. article ID 100 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  77. Submillimeter-Accurate Marker Localization within Low Gradient Magnetic Particle Imaging Tomograms

    Griese, F., Knopp, T., Werner, R., Schlaefer, A. & Möddel, M., 23.03.2017, In: Int J Magn Part Imag. 3, 1, p. article ID 1703011 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  78. 4D dose simulation in volumetric arc therapy: Accuracy and affecting parameters

    Sothmann, T., Gauer, T. & Werner, R., 2017, In: PLOS ONE. 12, 2, p. e0172810 17 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  79. Defining Restrictions and Limits of Registration-Based Quantification of Geometric Deformation in Cerebral Blood Vessels

    Schetelig, D., Sedlacik, J., Schmidt, F. N., Fiehler, J. & Werner, R., 2017, Bildverarbeitung für die Medizin 2017: Algorithmen - Systeme - Anwendungen. Maier-Hain, K. H., Deserno, T., Handels, H. & Tolxdorff, T. (eds.). 1 ed. Springer, p. 191-196 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  80. Low Rank and Sparse Matrix Decomposition as Stroke Segmentation Prior: Useful or Not? A Random Forest-Based Evaluation Study

    Werner, R., Schetelig, D., Sothmann, T., Mücke, E., Wilms, M., Cheng, B. & Forkert, N. D., 2017, Bildverarbeitung für die Medizin 2017: Algorithmen - Systeme - Anwendungen. Maier-Hein, K. H., Deserno, T., Handels, H. & Tolxdorff, T. (eds.). 1 ed. Springer, p. 161-166 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  81. Systematic Analysis of Jurkat T-Cell Deformation in Fluorescence Microscopy Data

    Antoni, S-T., Ismail, O. M. F., Schetelig, D., Diercks, B-P., Werner, R., Wolf, I., Guse, A. & Schlaefer, A., 2017, Bildverarbeitung für die Medizin 2017: Algorithmen - Systeme - Anwendungen. Maier-Hain, K. H., Deserno, T., Handels, H. & Thomas, T. (eds.). 1 ed. Springer, p. 275-280 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  82. 2016

  83. Regional Lung Ventilation Analysis Using Temporally Resolved Magnetic Resonance Imaging

    Kolb, C., Wetscherek, A., Buzan, M. T., Werner, R., Rank, C. M., Kachelrie, M., Kreuter, M., Dinkel, J., Heuel, C. P. & Maier-Hein, K., 11.2016, In: J COMPUT ASSIST TOMO. 40, 6, p. 899-906 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  84. Required transition from research to clinical application: Report on the 4D treatment planning workshops 2014 and 2015

    Knopf, A-C., Stützer, K., Richter, C., Rucinski, A., da Silva, J., Phillips, J., Engelsman, M., Shimizu, S., Werner, R., Jakobi, A., Göksel, O., Zhang, Y., Oshea, T., Fast, M., Perrin, R., Bert, C., Rinaldi, I., Korevaar, E. & McClelland, J., 07.2016, In: PHYS MEDICA. 32, 7, p. 874-882 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  85. Geometry planning and image registration in magnetic particle imaging using bimodal fiducial markers

    Werner, F., Jung, C., Hofmann, M., Werner, R., Salamon, J., Säring, D., Kaul, M. G., Them, K., Weber, O. M., Mummert, T., Adam, G., Ittrich, H. & Knopp, T., 16.05.2016, In: MED PHYS. 43, 6, p. 2884-2893 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  86. Phantom-based ground-truth generation for cerebral vessel segmentation and pulsatile deformation analysis

    Schetelig, D., Säring, D., Illies, T., Sedlacik, J., Kording, F. & Werner, R., 18.03.2016, Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. Webster, III, R. J. & Yaniv, Z. R. (eds.). 1 ed. SPIE , Vol. 9786. p. 978622-1-6 6 p. UNSP 978622 . (Proceeding of SPIE).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  87. Real time tracking in liver SBRT: comparison of CyberKnife and Vero by planning structure-based γ-evaluation and dose-area-histograms

    Sothmann, T., Blanck, O., Poels, K., Werner, R. & Gauer, T., 21.02.2016, In: PHYS MED BIOL. 61, 4, p. 1677-91 15 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  88. Beyond cost function masking: RPCA-based non-linear registration in the context of VLSM

    Werner, R., Wilms, M., Cheng, B. & Forkert, N. D., 2016, International Workshop on Pattern Recognition in Neuroimaging, PRNI 2016, Trento, Italy, June 22-24, 2016. 1 ed. p. 1-4 4 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  89. Geometrieplanung und Bildregistrierung mittels bimodaler Fiducial-Marker für Magnetic Particle Imaging

    Werner, F., Jung, C., Hofmann, M., Salamon, J. M., Werner, R., Säring, D., Kaul, M., Them, K., Weber, O. M., Mummert, T., Adam, G., Ittrich, H. & Knopp, T., 2016, Bildverarbeitung für die Medizin 2016: Algorithmen – Systeme – Anwendungen. Tolxdorff, T., Deserno, T. M., Handels, H. & Meinzer, H-P. (eds.). 1 ed. Springer, p. 128-133 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  90. Optimized projection binning for improved helical amplitude- and phase-based 4DCT reconstruction in the presence of breathing irregularity

    Werner, R., Hofmann, C. & Gauer, T., 2016, Medical Imaging 2016: Physics of Medical Imaging. Kontos, D., Flohr, T. G. & Lo, J. Y. (eds.). 1 ed. SPIE , Vol. 9783. p. 978313-1-6 6 p. 978313. (Proceedings of SPIE).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  91. 2015

  92. Sensitivity of tumor motion simulation accuracy to lung biomechanical modeling approaches and parameters

    Tehrani, J. N., Yang, Y., Werner, R., Lu, W., Low, D., Guo, X. & Wang, J., 21.11.2015, In: PHYS MED BIOL. 60, 22, p. 8833-8849 17 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  93. Frontrunners of T cell activation: Initial, localized Ca2+ signals mediated by NAADP and the type 1 ryanodine receptor

    Wolf, I. M. A., Diercks, B-P., Gattkowski, E., Czarniak, F., Kempski, J., Werner, R., Schetelig, D., Mittrücker, H-W., Schumacher, V., von Osten, M., Lodygin, D., Flügel, A., Fliegert, R. & Guse, A. H., 13.10.2015, In: SCI SIGNAL. 8, 398, p. Art. ra102 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  94. Groupwise Registration for Robust Motion Field Estimation in Artifact-Affected 4D CT Images

    Tack, A., Kobayashi, Y., Gauer, T., Schlaefer, A. & Werner, R., 10.2015, MICCAI Workshop on Imaging and Computer Assistance in Radiation Therapy Workshop (ICART). 1 ed. p. 18-25 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  95. Population-based Correspondence Models for Respiratory Motion Estimation in the Presence of Interfraction Motion Variations

    Wilms, M., Werner, R., Yamamoto, T., Handels, H. & Ehrhardt, J., 10.2015, MICCAI workshop on Imaging and Computer Assistance in Radiation Therapy Workshop (ICART). 1 ed. p. 81-88 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  96. Respiratory surface motion measurement by Microsoft Kinect: implementation and evaluation of a clinical setup

    Ortmüller, J., Gauer, T., Wilms, M., Handels, H. & Werner, R., 12.09.2015, In: Current Directions in Biomedical Engineering. 1, 1, p. 270-273 4 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  97. Design, performance characteristics and application examples of a new 4D motion platform

    Grohmann, C., Frenzel, T., Werner, R. & Cremers, F., 06.2015, In: Z MED PHYS. 25, 2, p. 156-167 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  98. Reference geometry-based detection of (4D-)CT motion artifacts: a feasibility study

    Werner, R. & Gauer, T., 20.03.2015, Medical Imaging 2015: Image Processing. Ourselin, S. & Styner, M. A. (eds.). 1 ed. SPIE , Vol. 9413. p. 0S1-7 7 p. (Proceedings of SPIE).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  99. Comparison of 3D and 4D Monte Carlo optimization in robotic tracking stereotactic body radiotherapy of lung cancer

    Chan, M. K. H., Werner, R., Ayadi, M. & Blanck, O., 02.2015, In: STRAHLENTHER ONKOL. 191, 2, p. 161-71 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  100. A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics

    Schetelig, D., Wolf, I., Diercks, B-P., Fliegert, R., Guse, A., Schlaefer, A. & Werner, R., 2015, Bildverarbeitung für die Medizin 2015. Handels, H., Deserno, T. M., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 401-406 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  101. Variational Registration: A Flexible Open-Source ITK Toolbox for Nonrigid Image Registration

    Ehrhardt, J., Schmidt-Richberg, A., Werner, R. & Handels, H., 2015, Bildverarbeitung für die Medizin 2015. Handels, H., Deserno, T. M., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 209-214 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  102. 2014

  103. A Flexible Variational Registration Framework

    Schmidt-Richberg, A., Werner, R., Handels, H. & Ehrhardt, J., 09.05.2014, In: Insight Journal. 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research

  104. Statistical Analysis of Surrogate Signals to Incorporate Respiratory Motion Variability into Radiotherapy Treatment Planning

    Wilms, M., Ehrhardt, J., Werner, R., Marx, M. & Handels, H., 23.04.2014, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling. Yaniv, Z. R. & Holmes, D. R. (eds.). 1 ed. SPIE , Vol. 9036. p. 0J1-8 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  105. Lung registration using automatically detected landmarks

    Polzin, T., Rühaak, J., Werner, R., Handels, H. & Modersitzki, J., 01.01.2014, In: METHOD INFORM MED. 53, 4, p. 250-6 7 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  106. Estimation of lung motion fields in 4D CT data by variational non-linear intensity-based registration:A comparison and evaluation study

    Werner, R., Schmidt-Richberg, A., Handels, H. & Ehrhardt, J., 2014, In: PHYS MED BIOL. 59, 15, p. 4247-60 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  107. High Accuracy Optical Flow for 3D Medical Image Registration Using the Census Cost Function

    Hermann, S. & Werner, R., 2014, Image and Video Technology. Klette, R., Rivera, M. & Satoh, S. (eds.). 1 ed. Berlin Heidelberg: Springer, Vol. 8333. p. 23-35 13 p. (Lecture Notes in Computer Science).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  108. Kombination von Atemsignalen zur Optimierung der Prädiktion komplexer atmungsbedingter Organ- und Tumorbewegungen

    Ortmüller, J., Wilms, M., Werner, R. & Handels, H., 2014, Bildverarbeitung für die Medizin 2014. Deserno, T., Handels, H., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 72-77 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  109. Multivariate regression approaches for surrogate-based diffeomorphic estimation of respiratory motion in radiation therapy

    Wilms, M., Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Schlemmer, H-P. & Handels, H., 2014, In: PHYS MED BIOL. 59, 5, p. 1147-64 18 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  110. Simulation of range imaging-based estimation of respiratory lung motion. Influence of noise, signal dimensionality and sampling patterns

    Wilms, M., Werner, R., Blendowski, M., Ortmüller, J. & Handels, H., 2014, In: METHOD INFORM MED. 53, 4, p. 257-63 7 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  111. Simulation of spatiotemporal CT data sets using a 4D MRI-based lung motion model

    Marx, M., Ehrhardt, J., Werner, R., Schlemmer, H-P. & Handels, H., 2014, In: INT J COMPUT ASS RAD. 9, 3, p. 401-9 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  112. TV-L1-based 3D Medical Image Registration with the Census Cost Function

    Hermann, S. & Werner, R., 2014, Image and Video Technology. Klette, R., Rivera, M. & Satoh, S. (eds.). 1 ed. Berlin, Heidelberg: Springer, Vol. 8333. p. 149-161 13 p. (Lecture Notes in Computer Science).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  113. 2013

  114. Combining Automatic Landmark Detection and Variational Methods for Lung CT Registration

    Thomas, P., Jan, R., Jan, S., Werner, R., Heldmann, S., Handels, H. & Modersitzki, J., 26.09.2013, 5th Workshop on Pulmonary Image Analysis . Rit, S., McClelland, J. R., de Bruijne, M., Kiraly, A., Kuhnigk, J-M., Kabus, S., van Rikxoort, E. & Beichel, R. (eds.). p. 85-96 12 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  115. Assessing accuracy of nonlinear registration in 4D image data using automatically detected landmark correspondences

    Werner, R., Duscha, C., Schmidt-Richberg, A., Ehrhardt, J. & Handels, H., 13.03.2013, SPIE Medical Imaging: Image Processing. Ourselin, S. & Haynor, D. R. (eds.). SPIE , Vol. 8669. p. 86690Z-1-9 9 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  116. Biophysical Modeling of Respiratory Organ Motion

    Werner, R., 2013, 4D Modeling and Estimation of Respiratory Motion for Radiation Therapy. Ehrhardt, J. & Lorenz, C. (eds.). 1 ed. Springer, p. 61-84 24 p. (Biological and Medical Physics, Biomedical Engineering).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  117. Decision Forests with Spatio-temporal Features for Graph-based Tumour Segmentation in 4D Lung CT

    Mirzaei, H., Tang, L., Werner, R. & Hamarneh, G., 2013, Machine Learning in Medical Imaging. Wu, G., Zhang, D., Shen, D., Yan, P., Suzuki, K. & Wang, F. (eds.). 1 ed. Springer, Vol. 8184. p. 179-186 8 p. (Lecture Notes in Computer Science).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  118. Strahlentherapie atmungsbewegter Tumoren: Bewegungsfeldschätzung und Dosisakkumulation anhand von 4D-Bilddaten

    Werner, R., 2013, Aktuelle Forschung Medizintechnik. Buzug, T. M. (ed.). 1 ed. Wiesbaden: Springer Vieweg, p. 1-227 227 p. (Aktuelle Forschung Medizintechnik).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  119. Validation and Comparison of Approaches to Respiratory Motion Estimation

    Kabus, S., Klinder, T., Murphy, K., Werner, R. & Sarrut, D., 2013, 4D Modeling and Estimation of Respiratory Motion for Radiation Therapy. Ehrhardt, J. & Lorenz, C. (eds.). 1 ed. Springer, p. 159-183 25 p. (Biological and Medical Physics, Biomedical Engineering).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  120. 2012

  121. Towards Accurate Dose Accumulation for Step-&-Shoot IMRT: Impact of Weighting Schemes and Temporal Image Resolution on the Estimation of Dosimetric Motion Effects.

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Albers, D., Frenzel, T., Petersen, C., Cremers, F. & Handels, H., 06.2012, In: Z MED PHYS. 22, 2, p. 109-122 14 p., 2.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  122. 2010

  123. A statistical shape and motion model for the prediction of respiratory lung motion

    Ehrhardt, J., Werner, R., Schmidt-Richberg, A. & Handels, H., 2010, Medical Imaging 2010: Image Processing. SPIE, p. 531-539 9 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  124. Automatische Landmarkendetektion und -übertragung zur Evaluation der Registrierung von thorakalen CT-Daten

    Werner, R., Wolf, J. C., Ehrhardt, J., Schmidt-Richberg, A. & Handels, H., 2010, Bildverarbeitung für die Medizin 2010: Algorithmen - Systeme - Anwendungen (Informatik Aktuell). Springer Berlin Heidelberg, p. 31-35 5 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  125. Direction-dependent regularization for improved estimation of liver and lung motion in 4D image data

    Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2010, Medical Imaging 2010: Image Processing. SPIE, p. 1-8 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  126. Estimation of motion fields by non-linear registration for local lung motion analysis in 4D CT image data

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Heiss, A. & Handels, H., 2010, In: INT J COMPUT ASS RAD. 5, 6, p. 595-605 6.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  127. Technical Note: Development of a tidal volume surrogate that replaces spirometry for physiological breathing monitoring in 4D CT

    Werner, R., White, B., Handels, H., Lu, W. & Low, D. A., 2010, In: MED PHYS. 36, 2, p. 615-620 2.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  128. 2009

  129. 4D Motion Modeling: Estimation of Respiratory Motion for Radiation Therapy

    Ehrhardt, J., Schmidt-Richberg, A., Werner, R. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 2166-2169 4 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  130. Analysis of Dose Shifts induced by Organ Movements during Treatment with TomoTherapy using a Motion Phantom and GafChromic EBT Films

    Grohmann, C., Werner, R., Dirk, A. & Cremers, F., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 1020-1023 4 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  131. Dose Accumulation based on Optimized Motion Field Estimation using Non-Linear Registration in Thoracic 4D CT Image Data

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Bodmann, B., Cremers, F. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 950-953 4 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  132. Estimation of Inner Lung Motion Fields by Non-linear Registration

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Cremers, F. & Handels, H., 2009, Bildverarbeitung für die Medizin 2009. Springer Berlin Heidelberg, p. 102-106 5 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  133. Evaluation and Comparison of Force Terms for the Estimation of Lung Motion by Non-linear Registration of 4D-CT Image Data

    Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 2028-2131 104 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  134. Integrierte Segmentierung und Trajektorienberechnung mittels diffeomorpher Registrierung in räumlich-zeitlichen CT-Bildfolgen

    Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2009, Bildverarbeitung für die Medizin 2009. Springer Berlin Heidelberg, p. 182-186 5 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  135. Patient-specific finite element modeling of respiratory lung motion using 4D CT image data.

    Werner, R., Ehrhardt, J., Schmidt, R. & Handels, H., 2009, In: MED PHYS. 36, 5, p. 1500-1511 5.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  136. Prediction of Respiratory Motion Using A Statistical 4D Mean Motion Model

    Ehrhardt, J., Werner, R., Schmidt-Richberg, A. & Handels, H., 2009, The Second International Workshop on Pulmonary Image Analysis. CreateSpace, p. 3-14 12 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  137. Slipping Objects in Image Registration: Improved Motion Field Estimation with Direction-dependent Regularization

    Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2009, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2009. Springer Berlin Heidelberg, p. 755-762 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  138. Validation and comparison of a biophysical modeling approach and non-linear registration for estimation of lung motion fields in thoracic 4D CT data (Proceedings Paper)

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A. & Handels, H., 2009, Medical Imaging 2009: Image Processing (Proceedings Volume). SPIE, p. 1-8 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  139. Virtual Spirometry: Utilizing an Abdominal Bellows System for Quantitatively Gating in 4D CT Acquisition

    Werner, R., White, B., Schwenke, M., Handels, H., Lu, W. & Low, D. A., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 855-858 4 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  140. 2007

  141. 4D medical image computing and visualization of lung tumor mobility in spatio-temporal CT image data.

    Handels, H., Werner, R., Schmidt, R., Frenzel, T., Lu, W., Low, D. & Ehrhardt, J., 2007, In: INT J MED INFORM. 76, 3, p. 433-439 3.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  142. An optical flow based method for improved reconstruction of 4D CT data sets acquired during free breathing.

    Ehrhardt, J., Werner, R., Säring, D., Frenzel, T., Lu, W., Low, D. & Handels, H., 2007, In: MED PHYS. 34, 2, p. 711-721 2.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  143. Motion artifact reducing reconstruction of 4D CT image data for the analysis of respiratory dynamics.

    Werner, R., Ehrhardt, J., Frenzel, T., Säring, D., Lu, W., Low, D. & Handels, H., 2007, In: METHOD INFORM MED. 46, 3, p. 254-260 3.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review