Research ExplorerResearch UnitsInstitute of Computational Neuroscience Publications

Institute of Computational Neuroscience

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Publications

  1. 2019

  2. Discrimination of the hierarchical structure of cortical layers in 2-photon microscopy data by combined unsupervised and supervised machine learning

    Li, D., Zavaglia, M., Wang, G., Xie, H., Hu, Y., Werner, R., Guan, J-S. & Hilgetag, C. C., 15.05.2019, In: SCI REP-UK. 9, 1, p. 7424

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  3. Exploring the limits of network topology estimation using diffusion-based tractography and tracer studies in the macaque cortex

    Shen, K., Goulas, A., Grayson, D. S., Eusebio, J., Gati, J. S., Menon, R. S., McIntosh, A. R. & Everling, S., 01.05.2019, In: NEUROIMAGE. 191, p. 81-92 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  4. Over the fence: Media-supported collaborative teaching and learning exemplified by diabetes prevention in an occupational setting.

    Preisser, A. M., Hampel, E., Riemer, M., Kraft, A. M. & Zyriax, B-C., 03.04.2019, In: AMEE MedEdPublish. 8, 2, 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  5. Neuron density fundamentally relates to architecture and connectivity of the primate cerebral cortex

    Beul, S. F. & Hilgetag, C. C., 01.04.2019, In: NEUROIMAGE. 189, p. 777-792 16 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  6. Self-consistent deep learning-based boosting of 4D cone-beam computed tomography reconstruction

    Madesta, F., Gauer, T., Sentker, T. & Werner, R., 15.03.2019, Medical Imaging 2019: Image Processing. 1 ed. SPIE , Vol. 10949. p. 1094902 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  7. Toward employing the full potential of magnetic particle imaging: exploring visualization techniques and clinical use cases for real-time 3D vascular imaging

    Werner, R., Weller, D., Salamon, J. M., Möddel, M. & Knopp, T., 15.03.2019, Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging. 1 ed. SPIE , Vol. 10953. p. 109531V 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  8. Patient-specific 4D Monte Carlo dose accumulation using correspondence-model-based motion prediction

    Sentker, T., Madesta, F. & Werner, R., 08.03.2019, Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). 1 ed. SPIE , Vol. 10951. p. 1095109 7 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  9. A blueprint of mammalian cortical connectomes

    Goulas, A., Majka, P., Rosa, M. G. P. & Hilgetag, C. C., 03.2019, In: PLOS BIOL. 17, 3, p. e2005346

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  10. Machbarkeitsstudie zur CNN-basierten Identifikation und TICI-Klassifizierung zerebraler ischämischer Infarkte in DSA-Daten

    Nielsen, M., Waldmann, M., Frölich, A., Fiehler, J. & Werner, R., 07.02.2019, Bildverarbeitung für die Medizin 2019: Algorithmen – Systeme – Anwendungen. Proceedings des Workshops vom 17. bis 19. März 2019 in Lübeck. 1 ed. Springer Vieweg, p. 200-205 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  11. Radiomics of Brain MRI: Utility in Prediction of Metastatic Tumor Type

    Kniep, H. C., Madesta, F., Schneider, T., Hanning, U., Schönfeld, M. H., Schön, G., Fiehler, J., Gauer, T., Werner, R. & Gellissen, S., 02.2019, In: RADIOLOGY. 290, 2, p. 479-487 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  12. Combining Good Old Random Forest and DeepLabv3+ for ISLES 2018 CT-Based Stroke Segmentation

    Böhme, L., Madesta, F., Sentker, T. & Werner, R., 26.01.2019, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. 1 ed. Springer, p. 335-342 8 p. (Lecture Notes in Computer Science; vol. 11383).

    Research output: SCORING: Contribution to book/anthology › Conference contribution - Article for conference › Research › peer-review

  13. An architectonic type principle integrates macroscopic cortico-cortical connections with intrinsic cortical circuits of the primate brain

    Hilgetag, C. C., Beul, S. F., van Albada, S. J. & Goulas, A., 2019, In: NETW NEUROSCI. 3, 4, p. 905-923 19 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  14. Comparison between diffusion MRI tractography and histological tract-tracing of cortico-cortical structural connectivity in the ferret brain

    Delettre, C., Messé, A., Dell, L-A., Foubet, O., Heuer, K., Larrat, B., Meriaux, S., Mangin, J-F., Reillo, I., de Juan Romero, C., Borrell, V., Toro, R. & Hilgetag, C. C., 2019, In: NETW NEUROSCI. 3, 4, p. 1038-1050 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  15. High-Resolution Calcium Imaging Method for Local Calcium Signaling

    Diercks, B-P., Werner, R., Schetelig, D., Wolf, I. & Guse, A., 2019, Calcium-Binding Proteins of the EF-Hand Superfamily. 1 ed. Humana Press, Vol. 1929. p. 27-39 13 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  16. MRI-based field of view selection for precise, real-time targeting in MPI

    Griese, F., Prieske, M., Möddel, M., Werner, R. & Knopp, T., 2019, 9th International Workshop on Magnetic Particle Imaging (IWMPI 2019). p. 207-208

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  17. Multimodal Memory Components and Their Long-Term Dynamics Identified in Cortical Layers II/III but Not Layer V

    Li, D., Wang, G., Xie, H., Hu, Y., Guan, J-S. & Hilgetag, C. C., 2019, In: FRONT INTEGR NEUROSC. 13, p. 54

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  18. Neuromorphic Electronic Systems for Reservoir Computing

    Hadäghi, F., 2019, Reservoir Computing. Springer Science+Business Media Singapore Private Limited, p. 221-237 17 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  19. Spiking Reservoir Computing Model for Patient-customized ECG Monitoring

    Hadäghi, F., 2019, Bernstein Conference 2019.

    Research output: SCORING: Contribution to book/anthology › Conference contribution - Poster › Research

  20. Topological reinforcement as a principle of modularity emergence in brain networks

    Damicelli, F., Hilgetag, C. C., Hütt, M-T. & Messé, A., 2019, In: NETW NEUROSCI. 3, 2, p. 589-605 17 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  21. Wrestling the Devil of Wasting Time: MPI System Matrix Recovery by Deep Learning

    Baltruschat, I. M., Griese, F., Szwargulski, P. K., Werner, R. & Knopp, T., 2019, 9th International Workschop on Magnetic Particle Imaging (IWMPI 2018) . 1 ed. Infinite Science Publishing

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  22. 2018

  23. ORAI1, STIM1/2, and RYR1 shape subsecond Ca2+ microdomains upon T cell activation.

    Diercks, B-P., Werner, R., Weidemüller, P., Czarniak, F., Hernandez, L. C., Lehmann, C., Rosche, A., Krüger, A., Kaufmann, U., Vaeth, M., Failla, A., Zobiak, B., Kandil, F-I., Schetelig, D., Ruthenbeck, A., Meier, C., Lodygin, D., Flügel, A., Ren, D., Wolf, I., Feske, S. & Guse, A., 18.12.2018, In: SCIENCE SIGNALING. 11, 561, p. eaat0358

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  24. Comprehensive computational modelling of the development of mammalian cortical connectivity underlying an architectonic type principle

    Beul, S. F., Goulas, A. & Hilgetag, C. C., 11.2018, In: PLOS COMPUT BIOL. 14, 11, p. e1006550

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  25. Cortical Gradients and Laminar Projections in Mammals

    Goulas, A., Zilles, K. & Hilgetag, C. C., 11.2018, In: TRENDS NEUROSCI. 41, 11, p. 775-788 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  26. Neuropil Distribution in the Anterior Cingulate and Occipital Cortex of Artiodactyls

    Spocter, M. A., Fairbanks, J., Locey, L., Nguyen, A., Bitterman, K., Dunn, R., Sherwood, C. C., Geletta, S., Dell, L-A., Patzke, N. & Manger, P. R., 11.2018, In: ANAT REC. 301, 11, p. 1871-1881 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  27. Post-mortem chemical excitability of the iris should not be used for forensic death time diagnosis

    Koehler, K., Sehner, S., Riemer, M., Gehl, A., Raupach, T. & Anders, S., 11.2018, In: INT J LEGAL MED. 132, 6, p. 1693-1697 5 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  28. A new cerebral vessel benchmark dataset (CAPUT) for validation of image-based aneurysm deformation estimation algorithms

    Schetelig, D., Frölich, A., Knopp, T. & Werner, R., 30.10.2018, In: SCI REP-UK. 8, 1, p. 15999 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  29. GDL-FIRE4D: Deep Learning-based fast 4D CT image registration

    Sentker, T., Madesta, F. & Werner, R., 09.2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). 1 ed. Springer, Vol. 11070. p. 765 - 773 9 p. (Lecture Notes in Computer Science).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  30. Intrinsic Functional Connectivity Resembles Cortical Architecture at Various Levels of Isoflurane Anesthesia

    Fischer, F., Pieper, F., Galindo-Leon, E., Engler, G., Hilgetag, C. C. & Engel, A. K., 01.08.2018, In: CEREB CORTEX. 28, 8, p. 2991-3003 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  31. Analysis of the influence of imaging-related uncertainties on cerebral aneurysm deformation quantification using a no-deformation physical flow phantom

    Schetelig, D., Sedlacik, J., Fiehler, J., Frölich, A., Knopp, T., Sothmann, T., Waschkewitz, J. & Werner, R., 20.07.2018, In: SCI REP-UK. 8, 1, p. 11004 9 p., 11004.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  32. Neural correlates of visuospatial bias in patients with left hemisphere stroke: a causal functional contribution analysis based on game theory

    Malherbe, C., Umarova, R., Zavaglia, M., Kaller, C., Beume, L., Thomalla, G., Weiller, C. & Hilgetag, C. C., 01.07.2018, In: NEUROPSYCHOLOGIA. 115, p. 142-153 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  33. Functional connectivity of task context representations in prefrontal nodes of the multiple demand network

    Stiers, P. & Goulas, A., 06.2018, In: BRAIN STRUCT FUNCT. 223, 5, p. 2455-2473 19 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  34. Influence of deformable image registration on 4D dose simulation for extracranial SBRT: A multi-registration framework study

    Mogadas, N., Sothmann, T., Knopp, T., Gauer, T., Petersen, C. & Werner, R., 05.2018, In: RADIOTHER ONCOL. 127, 2, p. 225-232 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  35. Toward a theory of coactivation patterns in excitable neural networks

    Messé, A., Hütt, M-T. & Hilgetag, C. C., 09.04.2018, In: PLOS COMPUT BIOL. 14, 4, p. e1006084

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  36. Critical Analysis of an e-Learning and Interactive Teaching Module with Respect to the Interpretation of Emergency Computed Tomography of the Brain

    Groth, M., Barthe, K. G., Riemer, M., Ernst, M., Herrmann, J., Fiehler, J. & Buhk, J-H., 04.2018, In: ROFO-FORTSCHR RONTG. 190, 4, p. 334-340 7 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  37. Multi-scale account of the network structure of macaque visual cortex

    Schmidt, M., Bakker, R., Hilgetag, C. C., Diesmann, M. & van Albada, S. J., 04.2018, In: BRAIN STRUCT FUNCT. 223, 3, p. 1409-1435 27 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  38. Influence of 4D CT motion artifacts on correspondence model-based 4D dose accumulation

    Sothmann, T., Gauer, T. & Werner, R., 12.03.2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). 1 ed. SPIE , Vol. 10576. p. 105760F-1 - 105760F-7 7 p. 105760F. (Progress in Biomedical Optics and Imaging).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  39. Under-reported dosimetry errors due to interplay effects during VMAT dose delivery in extreme hypofractionated stereotactic radiotherapy

    Gauer, T., Sothmann, T., Blanck, O., Petersen, C. & Werner, R., 01.02.2018, In: STRAHLENTHER ONKOL. 194, 6, p. 570-579

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  40. Brain anomaly networks uncover heterogeneous functional reorganization patterns after stroke

    Zou, Y., Zhao, Z., Yin, D., Fan, M., Small, M., Liu, Z., Hilgetag, C. C. & Kurths, J., 2018, In: NEUROIMAGE-CLIN. 20, p. 523-530 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  41. Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT

    Mogadas, N., Sothmann, T. & Werner, R., 2018, Bildverarbeitung für die Medizin: Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 11. bis 13. März 2018 in Erlangen. Maier, A., Deserno, T., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 188-193 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  42. Impact of Lesion Load Thresholds on Alberta Stroke Program Early Computed Tomographic Score in Diffusion-Weighted Imaging

    Schröder, J., Cheng, B., Malherbe, C., Ebinger, M., Köhrmann, M., Wu, O., Kang, D-W., Liebeskind, D. S., Tourdias, T., Singer, O. C., Campbell, B., Luby, M., Warach, S., Fiehler, J., Kemmling, A., Fiebach, J. B., Gerloff, C. & Thomalla, G., 2018, In: FRONT NEUROL. 9, p. 273

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  43. P121 Risikotest zum Typ 2 Diabetes: Evaluation des Prototyps im Rahmen eines betrieblichen Gesundheitstages der Stadtreinigung Hamburg.

    Kraft, A. M., Körner, W., Riemer, M., Zyriax, B-C., Harth, V. & Preisser, A. M., 2018, Dokumentationsband zur 58. Wissenschaftlichen Jahrestagung der DGAUM 2018. Angerer, P. & Muth, T. (eds.). 1 ed. p. 393 1 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  44. Self-reference-based and during-registration detection of motion artifacts in spatio-temporal image data

    Mücke, E., Handels, H. & Werner, R., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). 1 ed. SPIE , Vol. 10574. p. 10574-1 - 10574-7 7 p. (Proceedings of SPIE).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  45. Structural Properties of Synaptic Transmission and Temporal Dynamics at Excitatory Layer 5B Synapses in the Adult Rat Somatosensory Cortex

    Rollenhagen, A., Ohana, O., Sätzler, K., Hilgetag, C. C., Kuhl, D. & Lübke, J. H. R., 2018, In: FRONT SYNAPTIC NEURO. 10, p. 24

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  46. Technical considerations for automated low-pitch spiral 4D CT scanning protocol selection

    Werner, R., Sothmann, T., Madesta, F., Gauer, T. & Hofmann, C., 2018, Medical Imaging 2018: Physics of Medical Imaging. Lo, J. Y., Schmidt, T. G. & Chen, G-H. (eds.). 1 ed. SPIE , Vol. 10573. p. 105733Y-1-105733Y-6 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  47. 2017

  48. Correspondence model-based 4D VMAT dose simulation for analysis of local metastasis recurrence after extracranial SBRT

    Sothmann, T., Gauer, T., Wilms, M. & Werner, R., 13.11.2017, In: PHYS MED BIOL. 62, 23, p. 9001-9017

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  49. The challenge of mapping the human connectome based on diffusion tractography

    Maier-Hein, K. H., Neher, P. F., Houde, J-C., Côté, M-A., Garyfallidis, E., Zhong, J., Chamberland, M., Yeh, F-C., Lin, Y-C., Ji, Q., Reddick, W. E., Glass, J. O., Chen, D. Q., Feng, Y., Gao, C., Wu, Y., Ma, J., Renjie, H., Li, Q., Westin, C-F., Deslauriers-Gauthier, S., González, J. O. O., Paquette, M., St-Jean, S., Girard, G., Rheault, F., Sidhu, J., Tax, C. M. W., Guo, F., Mesri, H. Y., Dávid, S., Froeling, M., Heemskerk, A. M., Leemans, A., Boré, A., Pinsard, B., Bedetti, C., Desrosiers, M., Brambati, S., Doyon, J., Sarica, A., Vasta, R., Cerasa, A., Quattrone, A., Yeatman, J., Khan, A. R., Hodges, W., Alexander, S., Romascano, D., Barakovic, M., Auría, A., Esteban, O., Lemkaddem, A., Thiran, J-P., Cetingul, H. E., Odry, B. L., Mailhe, B., Nadar, M. S., Pizzagalli, F., Prasad, G., Villalon-Reina, J. E., Galvis, J., Thompson, P. M., Requejo, F. D. S., Laguna, P. L., Lacerda, L. M., Barrett, R., Dell'Acqua, F., Catani, M., Petit, L., Caruyer, E., Daducci, A., Dyrby, T. B., Holland-Letz, T., Hilgetag, C. C., Stieltjes, B. & Descoteaux, M., 07.11.2017, In: NAT COMMUN. 8, 1, p. 1349

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  50. Corticospinal control from M1 and PMv areas on inhibitory cervical propriospinal neurons in humans

    Giboin, L-S., Sangari, S., Lackmy-Vallée, A., Messé, A., Pradat-Diehl, P. & Marchand-Pauvert, V., 11.2017, In: Physiol Rep. 5, 20, p. UNSP e13387

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  51. Features of spatial and functional segregation and integration of the primate connectome revealed by trade-off between wiring cost and efficiency

    Chen, Y., Wang, S., Hilgetag, C. C. & Zhou, C., 29.09.2017, In: PLOS COMPUT BIOL. 13, 9, p. e1005776

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  52. Altered topology of structural brain networks in patients with Gilles de la Tourette syndrome

    Schlemm, E., Cheng, B., Fischer, F., Hilgetag, C., Gerloff, C. & Thomalla, G., 06.09.2017, In: SCI REP-UK. 7, 1, p. 10606

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  53. Human orbital and anterior medial prefrontal cortex: Intrinsic connectivity parcellation and functional organization

    Samara, Z., Evers, E. A. T., Goulas, A., Uylings, H. B. M., Rajkowska, G., Ramaekers, J. G. & Stiers, P., 09.2017, In: BRAIN STRUCT FUNCT. 222, 7, p. 2941-2960

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

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