Dr.rer.nat. ID: 41291
Rene Werner
Publications
- 2019
Combining Good Old Random Forest and DeepLabv3+ for ISLES 2018 CT-Based Stroke Segmentation
Böhme, L., Madesta, F., Sentker, T. & Werner, R., 26.01.2019, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. 1 ed. Springer, p. 335-342 8 p. (Lecture Notes in Computer Science; vol. 11383).Research output: SCORING: Contribution to book/anthology › Conference contribution - Article for conference › Research › peer-review
High-Resolution Calcium Imaging Method for Local Calcium Signaling
Diercks, B-P., Werner, R., Schetelig, D., Wolf, I. & Guse, A., 2019, Calcium-Binding Proteins of the EF-Hand Superfamily. 1 ed. Humana Press, Vol. 1929. p. 27-39 13 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
MRI-based field of view selection for precise, real-time targeting in MPI
Griese, F., Prieske, M., Möddel, M., Werner, R. & Knopp, T., 2019, 9th International Workshop on Magnetic Particle Imaging (IWMPI 2019). p. 207-208Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Wrestling the Devil of Wasting Time: MPI System Matrix Recovery by Deep Learning
Baltruschat, I. M., Griese, F., Szwargulski, P. K., Werner, R. & Knopp, T., 2019, 9th International Workschop on Magnetic Particle Imaging (IWMPI 2018) . 1 ed. Infinite Science PublishingResearch output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
- 2018
ORAI1, STIM1/2, and RYR1 shape subsecond Ca2+ microdomains upon T cell activation.
Diercks, B-P., Werner, R., Weidemüller, P., Czarniak, F., Hernandez, L. C., Lehmann, C., Rosche, A., Krüger, A., Kaufmann, U., Vaeth, M., Failla, A., Zobiak, B., Kandil, F-I., Schetelig, D., Ruthenbeck, A., Meier, C., Lodygin, D., Flügel, A., Ren, D., Wolf, I., Feske, S. & Guse, A., 18.12.2018, In: SCIENCE SIGNALING. 11, 561, p. eaat0358Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
A new cerebral vessel benchmark dataset (CAPUT) for validation of image-based aneurysm deformation estimation algorithms
Schetelig, D., Frölich, A., Knopp, T. & Werner, R., 30.10.2018, In: SCI REP-UK. 8, 1, p. 15999 8 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
GDL-FIRE4D: Deep Learning-based fast 4D CT image registration
Sentker, T., Madesta, F. & Werner, R., 09.2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). 1 ed. Springer, Vol. 11070. p. 765 - 773 9 p. (Lecture Notes in Computer Science).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Analysis of the influence of imaging-related uncertainties on cerebral aneurysm deformation quantification using a no-deformation physical flow phantom
Schetelig, D., Sedlacik, J., Fiehler, J., Frölich, A., Knopp, T., Sothmann, T., Waschkewitz, J. & Werner, R., 20.07.2018, In: SCI REP-UK. 8, 1, p. 11004 9 p., 11004.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Influence of deformable image registration on 4D dose simulation for extracranial SBRT: A multi-registration framework study
Mogadas, N., Sothmann, T., Knopp, T., Gauer, T., Petersen, C. & Werner, R., 05.2018, In: RADIOTHER ONCOL. 127, 2, p. 225-232 8 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Influence of 4D CT motion artifacts on correspondence model-based 4D dose accumulation
Sothmann, T., Gauer, T. & Werner, R., 12.03.2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). 1 ed. SPIE , Vol. 10576. p. 105760F-1 - 105760F-7 7 p. 105760F. (Progress in Biomedical Optics and Imaging).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Under-reported dosimetry errors due to interplay effects during VMAT dose delivery in extreme hypofractionated stereotactic radiotherapy
Gauer, T., Sothmann, T., Blanck, O., Petersen, C. & Werner, R., 01.02.2018, In: STRAHLENTHER ONKOL. 194, 6, p. 570-579Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT
Mogadas, N., Sothmann, T. & Werner, R., 2018, Bildverarbeitung für die Medizin: Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 11. bis 13. März 2018 in Erlangen. Maier, A., Deserno, T., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 188-193 6 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Self-reference-based and during-registration detection of motion artifacts in spatio-temporal image data
Mücke, E., Handels, H. & Werner, R., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). 1 ed. SPIE , Vol. 10574. p. 10574-1 - 10574-7 7 p. (Proceedings of SPIE).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Technical considerations for automated low-pitch spiral 4D CT scanning protocol selection
Werner, R., Sothmann, T., Madesta, F., Gauer, T. & Hofmann, C., 2018, Medical Imaging 2018: Physics of Medical Imaging. Lo, J. Y., Schmidt, T. G. & Chen, G-H. (eds.). 1 ed. SPIE , Vol. 10573. p. 105733Y-1-105733Y-6 6 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
- 2017
Correspondence model-based 4D VMAT dose simulation for analysis of local metastasis recurrence after extracranial SBRT
Sothmann, T., Gauer, T., Wilms, M. & Werner, R., 13.11.2017, In: PHYS MED BIOL. 62, 23, p. 9001-9017Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Subpopulation-based correspondence modelling for improved respiratory motion estimation in the presence of inter-fraction motion variations
Wilms, M., Werner, R., Yamamoto, T., Handels, H. & Ehrhardt, J., 26.06.2017, In: PHYS MED BIOL. 62, 14, p. 5823-5839 17 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Reduction of breathing irregularity-related motion artifacts in low-pitch spiral 4D CT by optimized projection binning
Werner, R., Hofmann, C., Mücke, E. & Gauer, T., 19.06.2017, In: RADIAT ONCOL. 12, 1, p. article ID 100 8 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Submillimeter-Accurate Marker Localization within Low Gradient Magnetic Particle Imaging Tomograms
Griese, F., Knopp, T., Werner, R., Schlaefer, A. & Möddel, M., 23.03.2017, In: Int J Magn Part Imag. 3, 1, p. article ID 1703011 9 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
4D dose simulation in volumetric arc therapy: Accuracy and affecting parameters
Sothmann, T., Gauer, T. & Werner, R., 2017, In: PLOS ONE. 12, 2, p. e0172810 17 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Defining Restrictions and Limits of Registration-Based Quantification of Geometric Deformation in Cerebral Blood Vessels
Schetelig, D., Sedlacik, J., Schmidt, F. N., Fiehler, J. & Werner, R., 2017, Bildverarbeitung für die Medizin 2017: Algorithmen - Systeme - Anwendungen. Maier-Hain, K. H., Deserno, T., Handels, H. & Tolxdorff, T. (eds.). 1 ed. Springer, p. 191-196 6 p. (Informatik aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Low Rank and Sparse Matrix Decomposition as Stroke Segmentation Prior: Useful or Not? A Random Forest-Based Evaluation Study
Werner, R., Schetelig, D., Sothmann, T., Mücke, E., Wilms, M., Cheng, B. & Forkert, N. D., 2017, Bildverarbeitung für die Medizin 2017: Algorithmen - Systeme - Anwendungen. Maier-Hein, K. H., Deserno, T., Handels, H. & Tolxdorff, T. (eds.). 1 ed. Springer, p. 161-166 6 p. (Informatik aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Systematic Analysis of Jurkat T-Cell Deformation in Fluorescence Microscopy Data
Antoni, S-T., Ismail, O. M. F., Schetelig, D., Diercks, B-P., Werner, R., Wolf, I., Guse, A. & Schlaefer, A., 2017, Bildverarbeitung für die Medizin 2017: Algorithmen - Systeme - Anwendungen. Maier-Hain, K. H., Deserno, T., Handels, H. & Thomas, T. (eds.). 1 ed. Springer, p. 275-280 6 p. (Informatik aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
- 2016
Regional Lung Ventilation Analysis Using Temporally Resolved Magnetic Resonance Imaging
Kolb, C., Wetscherek, A., Buzan, M. T., Werner, R., Rank, C. M., Kachelrie, M., Kreuter, M., Dinkel, J., Heuel, C. P. & Maier-Hein, K., 11.2016, In: J COMPUT ASSIST TOMO. 40, 6, p. 899-906 8 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Required transition from research to clinical application: Report on the 4D treatment planning workshops 2014 and 2015
Knopf, A-C., Stützer, K., Richter, C., Rucinski, A., da Silva, J., Phillips, J., Engelsman, M., Shimizu, S., Werner, R., Jakobi, A., Göksel, O., Zhang, Y., Oshea, T., Fast, M., Perrin, R., Bert, C., Rinaldi, I., Korevaar, E. & McClelland, J., 07.2016, In: PHYS MEDICA. 32, 7, p. 874-882 9 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Geometry planning and image registration in magnetic particle imaging using bimodal fiducial markers
Werner, F., Jung, C., Hofmann, M., Werner, R., Salamon, J., Säring, D., Kaul, M. G., Them, K., Weber, O. M., Mummert, T., Adam, G., Ittrich, H. & Knopp, T., 16.05.2016, In: MED PHYS. 43, 6, p. 2884-2893 11 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Phantom-based ground-truth generation for cerebral vessel segmentation and pulsatile deformation analysis
Schetelig, D., Säring, D., Illies, T., Sedlacik, J., Kording, F. & Werner, R., 18.03.2016, Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. Webster, III, R. J. & Yaniv, Z. R. (eds.). 1 ed. SPIE , Vol. 9786. p. 978622-1-6 6 p. UNSP 978622 . (Proceeding of SPIE).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Real time tracking in liver SBRT: comparison of CyberKnife and Vero by planning structure-based γ-evaluation and dose-area-histograms
Sothmann, T., Blanck, O., Poels, K., Werner, R. & Gauer, T., 21.02.2016, In: PHYS MED BIOL. 61, 4, p. 1677-91 15 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Beyond cost function masking: RPCA-based non-linear registration in the context of VLSM
Werner, R., Wilms, M., Cheng, B. & Forkert, N. D., 2016, International Workshop on Pattern Recognition in Neuroimaging, PRNI 2016, Trento, Italy, June 22-24, 2016. 1 ed. p. 1-4 4 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Geometrieplanung und Bildregistrierung mittels bimodaler Fiducial-Marker für Magnetic Particle Imaging
Werner, F., Jung, C., Hofmann, M., Salamon, J. M., Werner, R., Säring, D., Kaul, M., Them, K., Weber, O. M., Mummert, T., Adam, G., Ittrich, H. & Knopp, T., 2016, Bildverarbeitung für die Medizin 2016: Algorithmen – Systeme – Anwendungen. Tolxdorff, T., Deserno, T. M., Handels, H. & Meinzer, H-P. (eds.). 1 ed. Springer, p. 128-133 6 p. (Informatik aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Optimized projection binning for improved helical amplitude- and phase-based 4DCT reconstruction in the presence of breathing irregularity
Werner, R., Hofmann, C. & Gauer, T., 2016, Medical Imaging 2016: Physics of Medical Imaging. Kontos, D., Flohr, T. G. & Lo, J. Y. (eds.). 1 ed. SPIE , Vol. 9783. p. 978313-1-6 6 p. 978313. (Proceedings of SPIE).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
- 2015
Sensitivity of tumor motion simulation accuracy to lung biomechanical modeling approaches and parameters
Tehrani, J. N., Yang, Y., Werner, R., Lu, W., Low, D., Guo, X. & Wang, J., 21.11.2015, In: PHYS MED BIOL. 60, 22, p. 8833-8849 17 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Frontrunners of T cell activation: Initial, localized Ca2+ signals mediated by NAADP and the type 1 ryanodine receptor
Wolf, I. M. A., Diercks, B-P., Gattkowski, E., Czarniak, F., Kempski, J., Werner, R., Schetelig, D., Mittrücker, H-W., Schumacher, V., von Osten, M., Lodygin, D., Flügel, A., Fliegert, R. & Guse, A. H., 13.10.2015, In: SCI SIGNAL. 8, 398, p. Art. ra102 13 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Groupwise Registration for Robust Motion Field Estimation in Artifact-Affected 4D CT Images
Tack, A., Kobayashi, Y., Gauer, T., Schlaefer, A. & Werner, R., 10.2015, MICCAI Workshop on Imaging and Computer Assistance in Radiation Therapy Workshop (ICART). 1 ed. p. 18-25 8 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Population-based Correspondence Models for Respiratory Motion Estimation in the Presence of Interfraction Motion Variations
Wilms, M., Werner, R., Yamamoto, T., Handels, H. & Ehrhardt, J., 10.2015, MICCAI workshop on Imaging and Computer Assistance in Radiation Therapy Workshop (ICART). 1 ed. p. 81-88 8 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Respiratory surface motion measurement by Microsoft Kinect: implementation and evaluation of a clinical setup
Ortmüller, J., Gauer, T., Wilms, M., Handels, H. & Werner, R., 12.09.2015, In: Current Directions in Biomedical Engineering. 1, 1, p. 270-273 4 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Design, performance characteristics and application examples of a new 4D motion platform
Grohmann, C., Frenzel, T., Werner, R. & Cremers, F., 06.2015, In: Z MED PHYS. 25, 2, p. 156-167 12 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Reference geometry-based detection of (4D-)CT motion artifacts: a feasibility study
Werner, R. & Gauer, T., 20.03.2015, Medical Imaging 2015: Image Processing. Ourselin, S. & Styner, M. A. (eds.). 1 ed. SPIE , Vol. 9413. p. 0S1-7 7 p. (Proceedings of SPIE).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Comparison of 3D and 4D Monte Carlo optimization in robotic tracking stereotactic body radiotherapy of lung cancer
Chan, M. K. H., Werner, R., Ayadi, M. & Blanck, O., 02.2015, In: STRAHLENTHER ONKOL. 191, 2, p. 161-71 11 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics
Schetelig, D., Wolf, I., Diercks, B-P., Fliegert, R., Guse, A., Schlaefer, A. & Werner, R., 2015, Bildverarbeitung für die Medizin 2015. Handels, H., Deserno, T. M., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 401-406 6 p. (Informatik Aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Variational Registration: A Flexible Open-Source ITK Toolbox for Nonrigid Image Registration
Ehrhardt, J., Schmidt-Richberg, A., Werner, R. & Handels, H., 2015, Bildverarbeitung für die Medizin 2015. Handels, H., Deserno, T. M., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 209-214 6 p. (Informatik Aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
- 2014
A Flexible Variational Registration Framework
Schmidt-Richberg, A., Werner, R., Handels, H. & Ehrhardt, J., 09.05.2014, In: Insight Journal. 12 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research
Statistical Analysis of Surrogate Signals to Incorporate Respiratory Motion Variability into Radiotherapy Treatment Planning
Wilms, M., Ehrhardt, J., Werner, R., Marx, M. & Handels, H., 23.04.2014, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling. Yaniv, Z. R. & Holmes, D. R. (eds.). 1 ed. SPIE , Vol. 9036. p. 0J1-8 8 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Lung registration using automatically detected landmarks
Polzin, T., Rühaak, J., Werner, R., Handels, H. & Modersitzki, J., 01.01.2014, In: METHOD INFORM MED. 53, 4, p. 250-6 7 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Estimation of lung motion fields in 4D CT data by variational non-linear intensity-based registration:A comparison and evaluation study
Werner, R., Schmidt-Richberg, A., Handels, H. & Ehrhardt, J., 2014, In: PHYS MED BIOL. 59, 15, p. 4247-60 14 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
High Accuracy Optical Flow for 3D Medical Image Registration Using the Census Cost Function
Hermann, S. & Werner, R., 2014, Image and Video Technology. Klette, R., Rivera, M. & Satoh, S. (eds.). 1 ed. Berlin Heidelberg: Springer, Vol. 8333. p. 23-35 13 p. (Lecture Notes in Computer Science).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Kombination von Atemsignalen zur Optimierung der Prädiktion komplexer atmungsbedingter Organ- und Tumorbewegungen
Ortmüller, J., Wilms, M., Werner, R. & Handels, H., 2014, Bildverarbeitung für die Medizin 2014. Deserno, T., Handels, H., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 72-77 6 p. (Informatik Aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Multivariate regression approaches for surrogate-based diffeomorphic estimation of respiratory motion in radiation therapy
Wilms, M., Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Schlemmer, H-P. & Handels, H., 2014, In: PHYS MED BIOL. 59, 5, p. 1147-64 18 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Simulation of range imaging-based estimation of respiratory lung motion. Influence of noise, signal dimensionality and sampling patterns
Wilms, M., Werner, R., Blendowski, M., Ortmüller, J. & Handels, H., 2014, In: METHOD INFORM MED. 53, 4, p. 257-63 7 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Simulation of spatiotemporal CT data sets using a 4D MRI-based lung motion model
Marx, M., Ehrhardt, J., Werner, R., Schlemmer, H-P. & Handels, H., 2014, In: INT J COMPUT ASS RAD. 9, 3, p. 401-9 9 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
TV-L1-based 3D Medical Image Registration with the Census Cost Function
Hermann, S. & Werner, R., 2014, Image and Video Technology. Klette, R., Rivera, M. & Satoh, S. (eds.). 1 ed. Berlin, Heidelberg: Springer, Vol. 8333. p. 149-161 13 p. (Lecture Notes in Computer Science).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review