Dr.rer.nat. ID: 41291
Rene Werner
Publications
3d-SMRnet: Achieving a New Quality of MPI System Matrix Recovery by Deep Learning
Baltruschat, I. M., Szwargulski, P. K., Griese, F., Grosser, M., Werner, R. & Knopp, T., 10.2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part II. 1 ed. Springer Nature Switzerland, p. 74-82 9 p. (Lecture Notes in Computer Science (LNCS); no. 12262).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
4D CT image artifacts affect local control in SBRT of lung and liver metastases
Sentker, T., Schmidt, V., Ozga, A-K., Petersen, C., Madesta, F., Hofmann, C., Werner, R. & Gauer, T., 07.2020, In: RADIOTHER ONCOL. 148, p. 229-234 6 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
4D dose simulation in volumetric arc therapy: Accuracy and affecting parameters
Sothmann, T., Gauer, T. & Werner, R., 2017, In: PLOS ONE. 12, 2, p. e0172810 17 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
4D medical image computing and visualization of lung tumor mobility in spatio-temporal CT image data.
Handels, H., Werner, R., Schmidt, R., Frenzel, T., Lu, W., Low, D. & Ehrhardt, J., 2007, In: INT J MED INFORM. 76, 3, p. 433-439 3.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
4D Motion Modeling: Estimation of Respiratory Motion for Radiation Therapy
Ehrhardt, J., Schmidt-Richberg, A., Werner, R. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 2166-2169 4 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Adhesion to laminin-1 and collagen IV induces the formation of Ca2+ microdomains that sensitize mouse T cells for activation
Weiß, M., Hernandez, L. C., Gil Montoya, D. C., Löhndorf, A., Krüger, A., Kopdag, M., Uebler, L., Landwehr, M., Nawrocki, M., Huber, S., Woelk, L-M., Werner, R., Failla, A. V., Flügel, A., Dupont, G., Guse, A. H. & Diercks, B-P., 20.06.2023, In: SCIENCE SIGNALING. 16, 790, p. eabn9405Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
A Flexible Variational Registration Framework
Schmidt-Richberg, A., Werner, R., Handels, H. & Ehrhardt, J., 09.05.2014, In: Insight Journal. 12 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research
A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics
Schetelig, D., Wolf, I., Diercks, B-P., Fliegert, R., Guse, A., Schlaefer, A. & Werner, R., 2015, Bildverarbeitung für die Medizin 2015. Handels, H., Deserno, T. M., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 401-406 6 p. (Informatik Aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Analysis of Dose Shifts induced by Organ Movements during Treatment with TomoTherapy using a Motion Phantom and GafChromic EBT Films
Grohmann, C., Werner, R., Dirk, A. & Cremers, F., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 1020-1023 4 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Analysis of the influence of imaging-related uncertainties on cerebral aneurysm deformation quantification using a no-deformation physical flow phantom
Schetelig, D., Sedlacik, J., Fiehler, J., Frölich, A., Knopp, T., Sothmann, T., Waschkewitz, J. & Werner, R., 20.07.2018, In: SCI REP-UK. 8, 1, p. 11004 9 p., 11004.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
A new cerebral vessel benchmark dataset (CAPUT) for validation of image-based aneurysm deformation estimation algorithms
Schetelig, D., Frölich, A., Knopp, T. & Werner, R., 30.10.2018, In: SCI REP-UK. 8, 1, p. 15999 8 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
An optical flow based method for improved reconstruction of 4D CT data sets acquired during free breathing.
Ehrhardt, J., Werner, R., Säring, D., Frenzel, T., Lu, W., Low, D. & Handels, H., 2007, In: MED PHYS. 34, 2, p. 711-721 2.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Artificial intelligence in GI endoscopy: stumbling blocks, gold standards and the role of endoscopy societies
Schmitz, R., Werner, R., Repici, A., Bisschops, R., Meining, A., Zornow, M., Messmann, H., Hassan, C., Sharma, P. & Rösch, T., 03.2022, In: GUT. 71, 3, p. 451-454 4 p.Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research
Assessing accuracy of nonlinear registration in 4D image data using automatically detected landmark correspondences
Werner, R., Duscha, C., Schmidt-Richberg, A., Ehrhardt, J. & Handels, H., 13.03.2013, SPIE Medical Imaging: Image Processing. Ourselin, S. & Haynor, D. R. (eds.). SPIE , Vol. 8669. p. 86690Z-1-9 9 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
A statistical shape and motion model for the prediction of respiratory lung motion
Ehrhardt, J., Werner, R., Schmidt-Richberg, A. & Handels, H., 2010, Medical Imaging 2010: Image Processing. SPIE, p. 531-539 9 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Automatische Landmarkendetektion und -übertragung zur Evaluation der Registrierung von thorakalen CT-Daten
Werner, R., Wolf, J. C., Ehrhardt, J., Schmidt-Richberg, A. & Handels, H., 2010, Bildverarbeitung für die Medizin 2010: Algorithmen - Systeme - Anwendungen (Informatik Aktuell). Springer Berlin Heidelberg, p. 31-35 5 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Beyond cost function masking: RPCA-based non-linear registration in the context of VLSM
Werner, R., Wilms, M., Cheng, B. & Forkert, N. D., 2016, International Workshop on Pattern Recognition in Neuroimaging, PRNI 2016, Trento, Italy, June 22-24, 2016. 1 ed. p. 1-4 4 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Biophysical Modeling of Respiratory Organ Motion
Werner, R., 2013, 4D Modeling and Estimation of Respiratory Motion for Radiation Therapy. Ehrhardt, J. & Lorenz, C. (eds.). 1 ed. Springer, p. 61-84 24 p. (Biological and Medical Physics, Biomedical Engineering).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Clinical application of breathing-adapted 4D CT: image quality comparison to conventional 4D CT
Werner, R., Szkitsak, J., Madesta, F., Büttgen, L., Wimmert, L., Sentker, T., Fietkau, R., Haderlein, M., Bert, C., Gauer, T. & Hofmann, C., 07.2023, In: STRAHLENTHER ONKOL. 199, 7, p. 686-691 6 p.Research output: SCORING: Contribution to journal › Short publication › Research › peer-review
Combining Automatic Landmark Detection and Variational Methods for Lung CT Registration
Thomas, P., Jan, R., Jan, S., Werner, R., Heldmann, S., Handels, H. & Modersitzki, J., 26.09.2013, 5th Workshop on Pulmonary Image Analysis . Rit, S., McClelland, J. R., de Bruijne, M., Kiraly, A., Kuhnigk, J-M., Kabus, S., van Rikxoort, E. & Beichel, R. (eds.). p. 85-96 12 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Combining Direct 3D Volume Rendering and Magnetic Particle Imaging to Advance Radiation-Free Real-Time 3D Guidance of Vascular Interventions
Weller, D., Salamon, J. M., Frölich, A., Möddel, M., Knopp, T. & Werner, R., 02.2020, In: CARDIOVASC INTER RAD. 43, 2, p. 322-330 9 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Combining Good Old Random Forest and DeepLabv3+ for ISLES 2018 CT-Based Stroke Segmentation
Böhme, L., Madesta, F., Sentker, T. & Werner, R., 26.01.2019, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. 1 ed. Springer, p. 335-342 8 p. (Lecture Notes in Computer Science; vol. 11383).Research output: SCORING: Contribution to book/anthology › Conference contribution - Article for conference › Research › peer-review
Comparison of 3D and 4D Monte Carlo optimization in robotic tracking stereotactic body radiotherapy of lung cancer
Chan, M. K. H., Werner, R., Ayadi, M. & Blanck, O., 02.2015, In: STRAHLENTHER ONKOL. 191, 2, p. 161-71 11 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Comparison of intelligent 4D CT sequence scanning and conventional spiral 4D CT: a first comprehensive phantom study
Werner, R., Szkitsak, J., Sentker, T., Madesta, F., Schwarz, A., Fernolendt, S., Vornehm, M., Gauer, T., Bert, C. & Hofmann, C., 08.01.2021, In: PHYS MED BIOL. 66, 1, 10 p., 015004.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Correspondence model-based 4D VMAT dose simulation for analysis of local metastasis recurrence after extracranial SBRT
Sothmann, T., Gauer, T., Wilms, M. & Werner, R., 13.11.2017, In: PHYS MED BIOL. 62, 23, p. 9001-9017Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
DARTS: an open-source Python pipeline for Ca2+ microdomain analysis in live cell imaging data
Woelk, L-M., Kovacevic, D., Husseini, H., Förster, F., Gerlach, F., Möckl, F., Altfeld, M., Guse, A. H., Diercks, B-P. & Werner, R., 11.01.2024, In: FRONT IMMUNOL. 14, p. 1299435Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Decision Forests with Spatio-temporal Features for Graph-based Tumour Segmentation in 4D Lung CT
Mirzaei, H., Tang, L., Werner, R. & Hamarneh, G., 2013, Machine Learning in Medical Imaging. Wu, G., Zhang, D., Shen, D., Yan, P., Suzuki, K. & Wang, F. (eds.). 1 ed. Springer, Vol. 8184. p. 179-186 8 p. (Lecture Notes in Computer Science).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Deep Image Prior for Spatio-temporal Fluorescence Microscopy Images: DECO-DIP
Meyer, L., Woelk, L-M., Gee, C., Lohr, C., Arcot Kannabiran, S., Diercks, B-P. & Werner, R., 2024, Bildverarbeitung für die Medizin 2024: Proceedings, German Conference on Medical Image Computing, Erlangen, March 10–12, 2024. Maier, A., Deserno, TM., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, TM. (eds.). 1 ed. Springer Vieweg, p. 322-327 6 p. (Informatik Aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Deep Learning-Based Automated Thrombolysis in Cerebral Infarction Scoring: A Timely Proof-of-Principle Study
Nielsen, M., Waldmann, M., Frölich, A. M., Flottmann, F., Hristova, E., Bendszus, M., Seker, F., Fiehler, J., Sentker, T. & Werner, R., 11.2021, In: STROKE. 52, 11, p. 3497-3504 8 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images
Madesta, F., Sentker, T., Gauer, T. & Werner, R., 05.2024, In: MED PHYS. 51, 5, p. 3437-3454 18 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Defining Restrictions and Limits of Registration-Based Quantification of Geometric Deformation in Cerebral Blood Vessels
Schetelig, D., Sedlacik, J., Schmidt, F. N., Fiehler, J. & Werner, R., 2017, Bildverarbeitung für die Medizin 2017: Algorithmen - Systeme - Anwendungen. Maier-Hain, K. H., Deserno, T., Handels, H. & Tolxdorff, T. (eds.). 1 ed. Springer, p. 191-196 6 p. (Informatik aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Dekonvolution von Mikroskopiedaten bei niedrigem Signal-Rausch-Verhältnis
Woelk, L-M., Diercks, B-P. & Werner, R., 11.2022, In: BIOspektrum. 2022, 28, p. 720-722Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Design, performance characteristics and application examples of a new 4D motion platform
Grohmann, C., Frenzel, T., Werner, R. & Cremers, F., 06.2015, In: Z MED PHYS. 25, 2, p. 156-167 12 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Digital Health meets Hamburg integrated medical degree program iMED: Concept and introduction of the new interdisciplinary 2nd track Digital Health
Werner, R., Henningsen, M., Schmitz, R., Guse, A. H., Augustin, M. & Gauer, T., 16.11.2020, In: GMS Journal for Medical Education. 37, 6, p. Doc61 10 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Education › peer-review
Direction-dependent regularization for improved estimation of liver and lung motion in 4D image data
Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2010, Medical Imaging 2010: Image Processing. SPIE, p. 1-8 8 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Discordant and Converting Receptor Expressions in Brain Metastases from Breast Cancer: MRI-Based Non-Invasive Receptor Status Tracking
Heitkamp, A., Madesta, F., Amberg, S., Wahaj, S., Schröder, T., Bechstein, M., Meyer, L., Broocks, G., Hanning, U., Gauer, T., Werner, R., Fiehler, J., Gellißen, S. & Kniep, H. C., 23.05.2023, In: CANCERS. 15, 11, 2880.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Discrimination of the hierarchical structure of cortical layers in 2-photon microscopy data by combined unsupervised and supervised machine learning
Li, D., Zavaglia, M., Wang, G., Xie, H., Hu, Y., Werner, R., Guan, J-S. & Hilgetag, C. C., 15.05.2019, In: SCI REP-UK. 9, 1, p. 7424Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Dose Accumulation based on Optimized Motion Field Estimation using Non-Linear Registration in Thoracic 4D CT Image Data
Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Bodmann, B., Cremers, F. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 950-953 4 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Dose reduction in sequence scanning 4D CT imaging through respiratory signal-guided tube current modulation: A feasibility study
Schwarz, A., Werner, R., Wimmert, L., Vornehm, M., Gauer, T. & Hofmann, C., 12.2023, In: MED PHYS. 50, 12, p. 7539-7547 9 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Dual NADPH oxidases DUOX1 and DUOX2 synthesize NAADP and are necessary for Ca2+ signaling during T cell activation
Gu, F., Krüger, A., Roggenkamp, H. G., Alpers, R., Lodygin, D., Jaquet, V., Möckl, F., Hernandez C, L. C., Winterberg, K., Bauche, A., Rosche, A., Grasberger, H., Kao, J. Y., Schetelig, D., Werner, R., Schröder, K., Carty, M., Bowie, A. G., Huber, S., Meier, C., Mittrücker, H-W., Heeren, J., Krause, K-H., Flügel, A., Diercks, B-P. & Guse, A. H., 16.11.2021, In: SCIENCE SIGNALING. 14, 709, eabe3800.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT
Mogadas, N., Sothmann, T. & Werner, R., 2018, Bildverarbeitung für die Medizin: Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 11. bis 13. März 2018 in Erlangen. Maier, A., Deserno, T., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 188-193 6 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Estimation of Inner Lung Motion Fields by Non-linear Registration
Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Cremers, F. & Handels, H., 2009, Bildverarbeitung für die Medizin 2009. Springer Berlin Heidelberg, p. 102-106 5 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Estimation of lung motion fields in 4D CT data by variational non-linear intensity-based registration:A comparison and evaluation study
Werner, R., Schmidt-Richberg, A., Handels, H. & Ehrhardt, J., 2014, In: PHYS MED BIOL. 59, 15, p. 4247-60 14 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Estimation of motion fields by non-linear registration for local lung motion analysis in 4D CT image data
Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Heiss, A. & Handels, H., 2010, In: INT J COMPUT ASS RAD. 5, 6, p. 595-605 6.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Evaluation and Comparison of Force Terms for the Estimation of Lung Motion by Non-linear Registration of 4D-CT Image Data
Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 2028-2131 104 p.Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
Evaluation of magnetic resonance imaging-based radiomics characteristics for differentiation of benign and malignant peripheral nerve sheath tumors in neurofibromatosis type 1
Ristow, I., Madesta, F., Well, L., Shenas, F. Y., Wright, F., Molwitz, I., Farschtschi, S., Bannas, P., Adam, G., Mautner, V. F., Werner, R. & Salamon, J., 03.10.2022, In: NEURO-ONCOLOGY. 24, 10, p. 1790-1798 9 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Extending Tempcyclegan for Virtual Augmentation of Gastrointestinal Endoscopy Training Simulators
Wallrodt, M., Schulz-Alsen, M., Ehlken, H., Rösch, T., Schmitz, R. & Werner, R., 02.06.2023, Bildverarbeitung für die Medizin 2023: Proceedings, German Workshop on Medical Image Computing, Braunschweig, July 2-4, 2023. Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 3-8 6 p. (Informatik aktuell).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review
First clinical evaluation of breathing controlled four-dimensional computed tomography imaging
Szkitsak, J., Werner, R., Fernolendt, S., Schwarz, A., Ott, O. J., Fietkau, R., Hofmann, C. & Bert, C., 10.2021, In: PHYS IMAG RADIAT ONC. 20, p. 56-61 6 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Frontrunners of T cell activation: Initial, localized Ca2+ signals mediated by NAADP and the type 1 ryanodine receptor
Wolf, I. M. A., Diercks, B-P., Gattkowski, E., Czarniak, F., Kempski, J., Werner, R., Schetelig, D., Mittrücker, H-W., Schumacher, V., von Osten, M., Lodygin, D., Flügel, A., Fliegert, R. & Guse, A. H., 13.10.2015, In: SCI SIGNAL. 8, 398, p. Art. ra102 13 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
GDL-FIRE4D: Deep Learning-based fast 4D CT image registration
Sentker, T., Madesta, F. & Werner, R., 09.2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). 1 ed. Springer, Vol. 11070. p. 765 - 773 9 p. (Lecture Notes in Computer Science).Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review