Research ExplorerScientific StaffRene Werner Publications

Dr.rer.nat. ID: 41291

Rene Werner

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Publications

  1. Deep Learning-Based Automated Thrombolysis in Cerebral Infarction Scoring: A Timely Proof-of-Principle Study

    Nielsen, M., Waldmann, M., Frölich, A. M., Flottmann, F., Hristova, E., Bendszus, M., Seker, F., Fiehler, J., Sentker, T. & Werner, R., 11.2021, In: STROKE. 52, 11, p. 3497-3504 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  2. Self-Supervision for Medical Image Classification: State-of-the-Art Performance with ~100 Labeled Training Samples per Class

    Nielsen, M., Wenderoth, L., Sentker, T. & Werner, R., 28.07.2023, In: BIOENGINEERING-BASEL. 10, 8, 14 p., 895.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  3. Kombination von Atemsignalen zur Optimierung der Prädiktion komplexer atmungsbedingter Organ- und Tumorbewegungen

    Ortmüller, J., Wilms, M., Werner, R. & Handels, H., 2014, Bildverarbeitung für die Medizin 2014. Deserno, T., Handels, H., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 72-77 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  4. Respiratory surface motion measurement by Microsoft Kinect: implementation and evaluation of a clinical setup

    Ortmüller, J., Gauer, T., Wilms, M., Handels, H. & Werner, R., 12.09.2015, In: Current Directions in Biomedical Engineering. 1, 1, p. 270-273 4 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  5. Lung registration using automatically detected landmarks

    Polzin, T., Rühaak, J., Werner, R., Handels, H. & Modersitzki, J., 01.01.2014, In: METHOD INFORM MED. 53, 4, p. 250-6 7 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  6. Evaluation of magnetic resonance imaging-based radiomics characteristics for differentiation of benign and malignant peripheral nerve sheath tumors in neurofibromatosis type 1

    Ristow, I., Madesta, F., Well, L., Shenas, F. Y., Wright, F., Molwitz, I., Farschtschi, S., Bannas, P., Adam, G., Mautner, V. F., Werner, R. & Salamon, J., 03.10.2022, In: NEURO-ONCOLOGY. 24, 10, p. 1790-1798 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  7. HN1L/JPT2: A signaling protein that connects NAADP generation to Ca2+ microdomain formation

    Roggenkamp, H. G., Khansahib, I., Hernandez C, L. C., Zhang, Y., Lodygin, D., Krüger, A., Gu, F., Möckl, F., Löhndorf, A., Wolters, V., Woike, D., Rosche, A., Bauche, A., Schetelig, D., Werner, R., Schlüter, H., Failla, A. V., Meier, C., Fliegert, R., Walseth, T. F., Flügel, A., Diercks, B-P. & Guse, A. H., 23.03.2021, In: SCI SIGNAL. 14, 675

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  8. A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics

    Schetelig, D., Wolf, I., Diercks, B-P., Fliegert, R., Guse, A., Schlaefer, A. & Werner, R., 2015, Bildverarbeitung für die Medizin 2015. Handels, H., Deserno, T. M., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 401-406 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  9. Phantom-based ground-truth generation for cerebral vessel segmentation and pulsatile deformation analysis

    Schetelig, D., Säring, D., Illies, T., Sedlacik, J., Kording, F. & Werner, R., 18.03.2016, Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. Webster, III, R. J. & Yaniv, Z. R. (eds.). 1 ed. SPIE , Vol. 9786. p. 978622-1-6 6 p. UNSP 978622 . (Proceeding of SPIE).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  10. Defining Restrictions and Limits of Registration-Based Quantification of Geometric Deformation in Cerebral Blood Vessels

    Schetelig, D., Sedlacik, J., Schmidt, F. N., Fiehler, J. & Werner, R., 2017, Bildverarbeitung für die Medizin 2017: Algorithmen - Systeme - Anwendungen. Maier-Hain, K. H., Deserno, T., Handels, H. & Tolxdorff, T. (eds.). 1 ed. Springer, p. 191-196 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  11. Analysis of the influence of imaging-related uncertainties on cerebral aneurysm deformation quantification using a no-deformation physical flow phantom

    Schetelig, D., Sedlacik, J., Fiehler, J., Frölich, A., Knopp, T., Sothmann, T., Waschkewitz, J. & Werner, R., 20.07.2018, In: SCI REP-UK. 8, 1, p. 11004 9 p., 11004.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  12. A new cerebral vessel benchmark dataset (CAPUT) for validation of image-based aneurysm deformation estimation algorithms

    Schetelig, D., Frölich, A., Knopp, T. & Werner, R., 30.10.2018, In: SCI REP-UK. 8, 1, p. 15999 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  13. Slipping Objects in Image Registration: Improved Motion Field Estimation with Direction-dependent Regularization

    Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2009, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2009. Springer Berlin Heidelberg, p. 755-762 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  14. Direction-dependent regularization for improved estimation of liver and lung motion in 4D image data

    Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2010, Medical Imaging 2010: Image Processing. SPIE, p. 1-8 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  15. Integrierte Segmentierung und Trajektorienberechnung mittels diffeomorpher Registrierung in räumlich-zeitlichen CT-Bildfolgen

    Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2009, Bildverarbeitung für die Medizin 2009. Springer Berlin Heidelberg, p. 182-186 5 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  16. Evaluation and Comparison of Force Terms for the Estimation of Lung Motion by Non-linear Registration of 4D-CT Image Data

    Schmidt-Richberg, A., Ehrhardt, J., Werner, R. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 2028-2131 104 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  17. A Flexible Variational Registration Framework

    Schmidt-Richberg, A., Werner, R., Handels, H. & Ehrhardt, J., 09.05.2014, In: Insight Journal. 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research

  18. Technological quality requirements for stereotactic radiotherapy: Expert review group consensus from the DGMP Working Group for Physics and Technology in Stereotactic Radiotherapy

    Schmitt, D., Blanck, O., Gauer, T., Fix, M. K., Brunner, T. B., Fleckenstein, J., Loutfi-Krauss, B., Manser, P., Werner, R., Wilhelm, M-L., Baus, W. W. & Moustakis, C., 05.2020, In: STRAHLENTHER ONKOL. 196, 5, p. 421-443 23 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  19. Künstliche Intelligenz in der Endoskopie: Neuronale Netze und maschinelles Sehen – Techniken und Perspektiven

    Schmitz, R., Werner, R. & Rösch, T., 06.2019, In: Z GASTROENTEROL. 57, 6, p. 767-780 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  20. Künstliche Intelligenz in der Endoskopie: Neuronale Netze und maschinelles Sehen – Techniken und Perspektiven (reprint Z Gastroenterol 2019; 57(06): 767-780)

    Schmitz, R., Werner, R. & Rösch, T., 2020, In: Endo-Praxis. 2020, 36, p. 30-43

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  21. Artificial intelligence in GI endoscopy: stumbling blocks, gold standards and the role of endoscopy societies

    Schmitz, R., Werner, R., Repici, A., Bisschops, R., Meining, A., Zornow, M., Messmann, H., Hassan, C., Sharma, P. & Rösch, T., 03.2022, In: GUT. 71, 3, p. 451-454 4 p.

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  22. Multi-scale fully convolutional neural networks for histopathology image segmentation: From nuclear aberrations to the global tissue architecture

    Schmitz, R., Madesta, F., Nielsen, M., Krause, J., Steurer, S., Werner, R. & Rösch, T., 05.2021, In: MED IMAGE ANAL. 70, p. 101996 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  23. Reinforcement learning-basierte Patchpriorisierung zur beschleunigten Segmentierung von hochauflösenden Endoskopievideodaten

    Schüttler, S., Madesta, F., Rösch, T., Werner, R. & Schmitz, R., 05.04.2022, Informatik aktuell: Bildverarbeitung für die Medizin. Klaus, M-H., Deserno, T. M., Handels, H., Maier, A., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Wiesbaden: Springer Vieweg, p. 339-344 6 p. (Bildverarbeitung für die Medizin 2022).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  24. Dose reduction in sequence scanning 4D CT imaging through respiratory signal-guided tube current modulation: A feasibility study

    Schwarz, A., Werner, R., Wimmert, L., Vornehm, M., Gauer, T. & Hofmann, C., 12.2023, In: MED PHYS. 50, 12, p. 7539-7547 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  25. GDL-FIRE4D: Deep Learning-based fast 4D CT image registration

    Sentker, T., Madesta, F. & Werner, R., 09.2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). 1 ed. Springer, Vol. 11070. p. 765 - 773 9 p. (Lecture Notes in Computer Science).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  26. Patient-specific 4D Monte Carlo dose accumulation using correspondence-model-based motion prediction

    Sentker, T., Madesta, F. & Werner, R., 08.03.2019, Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). 1 ed. SPIE , Vol. 10951. p. 1095109 7 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  27. 4D CT image artifacts affect local control in SBRT of lung and liver metastases

    Sentker, T., Schmidt, V., Ozga, A-K., Petersen, C., Madesta, F., Hofmann, C., Werner, R. & Gauer, T., 07.2020, In: RADIOTHER ONCOL. 148, p. 229-234 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  28. Real time tracking in liver SBRT: comparison of CyberKnife and Vero by planning structure-based γ-evaluation and dose-area-histograms

    Sothmann, T., Blanck, O., Poels, K., Werner, R. & Gauer, T., 21.02.2016, In: PHYS MED BIOL. 61, 4, p. 1677-91 15 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  29. 4D dose simulation in volumetric arc therapy: Accuracy and affecting parameters

    Sothmann, T., Gauer, T. & Werner, R., 2017, In: PLOS ONE. 12, 2, p. e0172810 17 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  30. Correspondence model-based 4D VMAT dose simulation for analysis of local metastasis recurrence after extracranial SBRT

    Sothmann, T., Gauer, T., Wilms, M. & Werner, R., 13.11.2017, In: PHYS MED BIOL. 62, 23, p. 9001-9017

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  31. Influence of 4D CT motion artifacts on correspondence model-based 4D dose accumulation

    Sothmann, T., Gauer, T. & Werner, R., 12.03.2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). 1 ed. SPIE , Vol. 10576. p. 105760F-1 - 105760F-7 7 p. 105760F. (Progress in Biomedical Optics and Imaging).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  32. First clinical evaluation of breathing controlled four-dimensional computed tomography imaging

    Szkitsak, J., Werner, R., Fernolendt, S., Schwarz, A., Ott, O. J., Fietkau, R., Hofmann, C. & Bert, C., 10.2021, In: PHYS IMAG RADIAT ONC. 20, p. 56-61 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  33. Groupwise Registration for Robust Motion Field Estimation in Artifact-Affected 4D CT Images

    Tack, A., Kobayashi, Y., Gauer, T., Schlaefer, A. & Werner, R., 10.2015, MICCAI Workshop on Imaging and Computer Assistance in Radiation Therapy Workshop (ICART). 1 ed. p. 18-25 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  34. Sensitivity of tumor motion simulation accuracy to lung biomechanical modeling approaches and parameters

    Tehrani, J. N., Yang, Y., Werner, R., Lu, W., Low, D., Guo, X. & Wang, J., 21.11.2015, In: PHYS MED BIOL. 60, 22, p. 8833-8849 17 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  35. Combining Automatic Landmark Detection and Variational Methods for Lung CT Registration

    Thomas, P., Jan, R., Jan, S., Werner, R., Heldmann, S., Handels, H. & Modersitzki, J., 26.09.2013, 5th Workshop on Pulmonary Image Analysis . Rit, S., McClelland, J. R., de Bruijne, M., Kiraly, A., Kuhnigk, J-M., Kabus, S., van Rikxoort, E. & Beichel, R. (eds.). p. 85-96 12 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  36. Extending Tempcyclegan for Virtual Augmentation of Gastrointestinal Endoscopy Training Simulators

    Wallrodt, M., Schulz-Alsen, M., Ehlken, H., Rösch, T., Schmitz, R. & Werner, R., 02.06.2023, Bildverarbeitung für die Medizin 2023: Proceedings, German Workshop on Medical Image Computing, Braunschweig, July 2-4, 2023. Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 3-8 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  37. Adhesion to laminin-1 and collagen IV induces the formation of Ca2+ microdomains that sensitize mouse T cells for activation

    Weiß, M., Hernandez, L. C., Gil Montoya, D. C., Löhndorf, A., Krüger, A., Kopdag, M., Uebler, L., Landwehr, M., Nawrocki, M., Huber, S., Woelk, L-M., Werner, R., Failla, A. V., Flügel, A., Dupont, G., Guse, A. H. & Diercks, B-P., 20.06.2023, In: SCIENCE SIGNALING. 16, 790, p. eabn9405

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  38. Combining Direct 3D Volume Rendering and Magnetic Particle Imaging to Advance Radiation-Free Real-Time 3D Guidance of Vascular Interventions

    Weller, D., Salamon, J. M., Frölich, A., Möddel, M., Knopp, T. & Werner, R., 02.2020, In: CARDIOVASC INTER RAD. 43, 2, p. 322-330 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  39. Patient-specific finite element modeling of respiratory lung motion using 4D CT image data.

    Werner, R., Ehrhardt, J., Schmidt, R. & Handels, H., 2009, In: MED PHYS. 36, 5, p. 1500-1511 5.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  40. Motion artifact reducing reconstruction of 4D CT image data for the analysis of respiratory dynamics.

    Werner, R., Ehrhardt, J., Frenzel, T., Säring, D., Lu, W., Low, D. & Handels, H., 2007, In: METHOD INFORM MED. 46, 3, p. 254-260 3.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  41. Automatische Landmarkendetektion und -übertragung zur Evaluation der Registrierung von thorakalen CT-Daten

    Werner, R., Wolf, J. C., Ehrhardt, J., Schmidt-Richberg, A. & Handels, H., 2010, Bildverarbeitung für die Medizin 2010: Algorithmen - Systeme - Anwendungen (Informatik Aktuell). Springer Berlin Heidelberg, p. 31-35 5 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  42. Validation and comparison of a biophysical modeling approach and non-linear registration for estimation of lung motion fields in thoracic 4D CT data (Proceedings Paper)

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A. & Handels, H., 2009, Medical Imaging 2009: Image Processing (Proceedings Volume). SPIE, p. 1-8 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  43. Virtual Spirometry: Utilizing an Abdominal Bellows System for Quantitatively Gating in 4D CT Acquisition

    Werner, R., White, B., Schwenke, M., Handels, H., Lu, W. & Low, D. A., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 855-858 4 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  44. Dose Accumulation based on Optimized Motion Field Estimation using Non-Linear Registration in Thoracic 4D CT Image Data

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Bodmann, B., Cremers, F. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 950-953 4 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  45. Estimation of motion fields by non-linear registration for local lung motion analysis in 4D CT image data

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Heiss, A. & Handels, H., 2010, In: INT J COMPUT ASS RAD. 5, 6, p. 595-605 6.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  46. Estimation of Inner Lung Motion Fields by Non-linear Registration

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Cremers, F. & Handels, H., 2009, Bildverarbeitung für die Medizin 2009. Springer Berlin Heidelberg, p. 102-106 5 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  47. Technical Note: Development of a tidal volume surrogate that replaces spirometry for physiological breathing monitoring in 4D CT

    Werner, R., White, B., Handels, H., Lu, W. & Low, D. A., 2010, In: MED PHYS. 36, 2, p. 615-620 2.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  48. Towards Accurate Dose Accumulation for Step-&-Shoot IMRT: Impact of Weighting Schemes and Temporal Image Resolution on the Estimation of Dosimetric Motion Effects.

    Werner, R., Ehrhardt, J., Schmidt-Richberg, A., Albers, D., Frenzel, T., Petersen, C., Cremers, F. & Handels, H., 06.2012, In: Z MED PHYS. 22, 2, p. 109-122 14 p., 2.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  49. Strahlentherapie atmungsbewegter Tumoren: Bewegungsfeldschätzung und Dosisakkumulation anhand von 4D-Bilddaten

    Werner, R., 2013, Aktuelle Forschung Medizintechnik. Buzug, T. M. (ed.). 1 ed. Wiesbaden: Springer Vieweg, p. 1-227 227 p. (Aktuelle Forschung Medizintechnik).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  50. Biophysical Modeling of Respiratory Organ Motion

    Werner, R., 2013, 4D Modeling and Estimation of Respiratory Motion for Radiation Therapy. Ehrhardt, J. & Lorenz, C. (eds.). 1 ed. Springer, p. 61-84 24 p. (Biological and Medical Physics, Biomedical Engineering).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

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