Research ExplorerResearch UnitsInstitute of Computational Neuroscience Publications

Institute of Computational Neuroscience

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Publications

  1. 2024

  2. Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images

    Madesta, F., Sentker, T., Gauer, T. & Werner, R., 05.2024, In: MED PHYS. 51, 5, p. 3437-3454 18 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  3. Attention-driven modulation of auditory cortex activity during selective listening in a multi-speaker setting

    Puschmann, S., Regev, M., Fakhar, K., Zatorre, R. & Thiel, C., 10.04.2024, In: J NEUROSCI. 44, 15, e1157232023.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  4. Downstream network transformations dissociate neural activity from causal functional contributions

    Fakhar, K., Dixit, S., Hadaeghi, F., Kording, K. P. & Hilgetag, C. C., 24.01.2024, In: SCI REP-UK. 14, 1, p. 2103

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  5. Spatial normalization for voxel-based lesion symptom mapping: impact of registration approaches

    Jühling, D., Rajashekar, D., Cheng, B., Hilgetag, C. C., Forkert, N. D. & Werner, R., 17.01.2024, In: FRONT NEUROSCI-SWITZ. 18, p. 1296357

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  6. DARTS: an open-source Python pipeline for Ca2+ microdomain analysis in live cell imaging data

    Woelk, L-M., Kovacevic, D., Husseini, H., Förster, F., Gerlach, F., Möckl, F., Altfeld, M., Guse, A. H., Diercks, B-P. & Werner, R., 11.01.2024, In: FRONT IMMUNOL. 14, p. 1299435

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  7. Deep Image Prior for Spatio-temporal Fluorescence Microscopy Images: DECO-DIP

    Meyer, L., Woelk, L-M., Gee, C., Lohr, C., Arcot Kannabiran, S., Diercks, B-P. & Werner, R., 2024, Bildverarbeitung für die Medizin 2024: Proceedings, German Conference on Medical Image Computing, Erlangen, March 10–12, 2024. Maier, A., Deserno, TM., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, TM. (eds.). 1 ed. Springer Vieweg, p. 322-327 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  8. Time-resolved role of P2X4 and P2X7 during CD8+ T cell activation

    Brock, V. J., Lory, N. C., Möckl, F., Birus, M., Stähler, T., Woelk, L-M., Jaeckstein, M., Heeren, J., Koch-Nolte, F., Rissiek, B., Mittrücker, H-W., Guse, A. H., Werner, R. & Diercks, B-P., 2024, In: FRONT IMMUNOL. 15, p. 1258119

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  9. 2023

  10. Dose reduction in sequence scanning 4D CT imaging through respiratory signal-guided tube current modulation: A feasibility study

    Schwarz, A., Werner, R., Wimmert, L., Vornehm, M., Gauer, T. & Hofmann, C., 12.2023, In: MED PHYS. 50, 12, p. 7539-7547 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  11. Structural basis of envelope and phase intrinsic coupling modes in the cerebral cortex

    Messé, A., Hollensteiner, K. J., Delettre, C., Dell-Brown, L-A., Pieper, F., Nentwig, L. J., Galindo-Leon, E. E., Larrat, B., Mériaux, S., Mangin, J-F., Reillo, I., Juan Romero, C. D., Borrell, V., Engler, G., Toro, R., Engel, A. K. & Hilgetag, C. C., 01.08.2023, In: NEUROIMAGE. 276, 120212.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  12. Self-Supervision for Medical Image Classification: State-of-the-Art Performance with ~100 Labeled Training Samples per Class

    Nielsen, M., Wenderoth, L., Sentker, T. & Werner, R., 28.07.2023, In: BIOENGINEERING-BASEL. 10, 8, 14 p., 895.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  13. Clinical application of breathing-adapted 4D CT: image quality comparison to conventional 4D CT

    Werner, R., Szkitsak, J., Madesta, F., Büttgen, L., Wimmert, L., Sentker, T., Fietkau, R., Haderlein, M., Bert, C., Gauer, T. & Hofmann, C., 07.2023, In: STRAHLENTHER ONKOL. 199, 7, p. 686-691 6 p.

    Research output: SCORING: Contribution to journal › Short publication › Research › peer-review

  14. Adhesion to laminin-1 and collagen IV induces the formation of Ca2+ microdomains that sensitize mouse T cells for activation

    Weiß, M., Hernandez, L. C., Gil Montoya, D. C., Löhndorf, A., Krüger, A., Kopdag, M., Uebler, L., Landwehr, M., Nawrocki, M., Huber, S., Woelk, L-M., Werner, R., Failla, A. V., Flügel, A., Dupont, G., Guse, A. H. & Diercks, B-P., 20.06.2023, In: SCIENCE SIGNALING. 16, 790, p. eabn9405

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  15. Extending Tempcyclegan for Virtual Augmentation of Gastrointestinal Endoscopy Training Simulators

    Wallrodt, M., Schulz-Alsen, M., Ehlken, H., Rösch, T., Schmitz, R. & Werner, R., 02.06.2023, Bildverarbeitung für die Medizin 2023: Proceedings, German Workshop on Medical Image Computing, Braunschweig, July 2-4, 2023. Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 3-8 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  16. Label Efficient Classification in Liquid Biopsy Data by Self-supervision

    Husseini, H., Nielsen, M., Pantel, K., Wikman, H., Riethdorf, S. & Werner, R., 02.06.2023, Bildverarbeitung für die Medizin 2023: Proceedings, German Workshop on Medical Image Computing, Braunschweig, July 2-4, 2023. Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 261-266 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  17. Discordant and Converting Receptor Expressions in Brain Metastases from Breast Cancer: MRI-Based Non-Invasive Receptor Status Tracking

    Heitkamp, A., Madesta, F., Amberg, S., Wahaj, S., Schröder, T., Bechstein, M., Meyer, L., Broocks, G., Hanning, U., Gauer, T., Werner, R., Fiehler, J., Gellißen, S. & Kniep, H. C., 23.05.2023, In: CANCERS. 15, 11, 2880.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  18. A topology-based computational framework to assess the effect of deep brain stimulation in the context of freezing of gait in Parkinson’s disease

    Popova, M., Messe, A., Gulberti, A., Gerloff, C., Pötter-Nerger, M. & Hilgetag, C-C., 01.04.2023, In: CLIN NEUROPHYSIOL. 148, p. e61-e62 2 p.

    Research output: SCORING: Contribution to journal › Conference abstract in journal › Research › peer-review

  19. From Circuit Principles to Human Psychiatric Disorders

    Barbas, H. & Hilgetag, C. C., 01.03.2023, In: BIOL PSYCHIAT. 93, 5, p. 388-390 3 p.

    Research output: SCORING: Contribution to journal › Comment/debate › Research

  20. Simulation of neuroplasticity in a CNN-based in-silico model of neurodegeneration of the visual system

    Moore, J. A., Wilms, M., Gutierrez, A., Ismail, Z., Fakhar, K., Hadaeghi, F., Hilgetag, C. C. & Forkert, N. D., 2023, In: FRONT COMPUT NEUROSC. 17, p. 1274824

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  21. 2022

  22. Brain connectivity meets reservoir computing

    Damicelli, F., Hilgetag, C. C. & Goulas, A., 11.2022, In: PLOS COMPUT BIOL. 18, 11, e1010639.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  23. Dekonvolution von Mikroskopiedaten bei niedrigem Signal-Rausch-Verhältnis

    Woelk, L-M., Diercks, B-P. & Werner, R., 11.2022, In: BIOspektrum. 2022, 28, p. 720-722

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  24. Task-specific subnetworks extend from prefrontal cortex to striatum

    Stiers, P. & Goulas, A., 11.2022, In: CORTEX. 156, p. 106-125 20 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  25. ΔFosB accumulation in hippocampal granule cells drives cFos pattern separation during spatial learning

    Lamothe-Molina, P. J., Franzelin, A., Beck, L., Li, D., Auksutat, L., Fieblinger, T., Laprell, L., Alhbeck, J., Gee, C. E., Kneussel, M., Engel, A. K., Hilgetag, C. C., Morellini, F. & Oertner, T. G., 26.10.2022, In: NAT COMMUN. 13, 1, 6376.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  26. Evaluation of magnetic resonance imaging-based radiomics characteristics for differentiation of benign and malignant peripheral nerve sheath tumors in neurofibromatosis type 1

    Ristow, I., Madesta, F., Well, L., Shenas, F. Y., Wright, F., Molwitz, I., Farschtschi, S., Bannas, P., Adam, G., Mautner, V. F., Werner, R. & Salamon, J., 03.10.2022, In: NEURO-ONCOLOGY. 24, 10, p. 1790-1798 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  27. Reaction-diffusion models in weighted and directed connectomes

    Schmitt, O., Nitzsche, C., Eipert, P., Prathapan, V., Hütt, M-T. & Hilgetag, C., 10.2022, In: PLOS COMPUT BIOL. 18, 10, e1010507.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  28. Heterogeneous Reservoir Computing Models for Persian Speech Recognition

    Ansari, Z., Pourhoseini, F. & Hadäghi, F., 30.09.2022, In: International Joint Conference on Neural Networks (IJCNN). 2022, p. 1-7

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  29. ‘One region to control them all'- the surprising effectiveness of network control theory in predicting post-stroke recovery from aphasia

    Popova, M., fakhar, K. & Braun, W., 10.08.2022, In: FRONT COMPUT NEUROSC. 16, p. 943396 943396.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  30. A natural cortical axis connecting the outside and inside of the human brain

    Hilgetag, C-C., Goulas, A. & Changeux, J-P., 02.08.2022, In: NETW NEUROSCI. 6, 4, p. 950–959 10 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  31. Systematic perturbation of an artificial neural network: A step towards quantifying causal contributions in the brain

    Fakhar, K. & Hilgetag, C. C., 06.2022, In: PLOS COMPUT BIOL. 18, 6, e1010250.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  32. Brain simulation as a cloud service: The Virtual Brain on EBRAINS

    Schirner, M., Domide, L., Perdikis, D., Triebkorn, P., Stefanovski, L., Pai, R., Prodan, P., Valean, B., Palmer, J., Langford, C., Blickensdörfer, A., van der Vlag, M., Diaz-Pier, S., Peyser, A., Klijn, W., Pleiter, D., Nahm, A., Schmid, O., Woodman, M., Zehl, L., Fousek, J., Petkoski, S., Kusch, L., Hashemi, M., Marinazzo, D., Mangin, J-F., Flöel, A., Akintoye, S., Stahl, B. C., Cepic, M., Johnson, E., Deco, G., McIntosh, A. R., Hilgetag, C. C., Morgan, M., Schuller, B., Upton, A., McMurtrie, C., Dickscheid, T., Bjaalie, J. G., Amunts, K., Mersmann, J., Jirsa, V. & Ritter, P., 01.05.2022, In: NEUROIMAGE. 251, 118973.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  33. Reinforcement learning-basierte Patchpriorisierung zur beschleunigten Segmentierung von hochauflösenden Endoskopievideodaten

    Schüttler, S., Madesta, F., Rösch, T., Werner, R. & Schmitz, R., 05.04.2022, Informatik aktuell: Bildverarbeitung für die Medizin. Klaus, M-H., Deserno, T. M., Handels, H., Maier, A., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Wiesbaden: Springer Vieweg, p. 339-344 6 p. (Bildverarbeitung für die Medizin 2022).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  34. Artificial intelligence in GI endoscopy: stumbling blocks, gold standards and the role of endoscopy societies

    Schmitz, R., Werner, R., Repici, A., Bisschops, R., Meining, A., Zornow, M., Messmann, H., Hassan, C., Sharma, P. & Rösch, T., 03.2022, In: GUT. 71, 3, p. 451-454 4 p.

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  35. The highways and byways of the brain

    Hilgetag, C. C. & Zikopoulos, B., 03.2022, In: PLOS BIOL. 20, 3, p. e3001612

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  36. Association of Age and Structural Brain Changes With Functional Connectivity and Executive Function in a Middle-Aged to Older Population-Based Cohort

    Schulz, M., Mayer, C., Schlemm, E., Frey, B. M., Malherbe, C., Petersen, M., Gallinat, J., Kühn, S., Fiehler, J., Hanning, U., Twerenbold, R., Gerloff, C., Cheng, B. & Thomalla, G., 25.02.2022, In: FRONT AGING NEUROSCI. 14, 782738.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  37. Disentangling cortical functional connectivity strength and topography reveals divergent roles of genes and environment

    Burger, B., Nenning, K-H., Schwartz, E., Margulies, D. S., Goulas, A., Liu, H., Neubauer, S., Dauwels, J., Prayer, D. & Langs, G., 15.02.2022, In: NEUROIMAGE. 247, 118770.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  38. P2X4 and P2X7 are essential players in basal T cell activity and Ca2+ signaling milliseconds after T cell activation

    Brock, V. J., Wolf, I. M. A., Er-Lukowiak, M., Lory, N., Stähler, T., Woelk, L-M., Mittrücker, H-W., Müller, C. E., Koch-Nolte, F., Rissiek, B., Werner, R., Guse, A. H. & Diercks, B-P., 04.02.2022, In: SCI ADV. 8, 5, eabl9770.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  39. High-frequency oscillations and sequence generation in two-population models of hippocampal region CA1

    Braun, W. & Memmesheimer, R-M., 02.2022, In: PLOS COMPUT BIOL. 18, 2, e1009891.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  40. Bringing Anatomical Information into Neuronal Network Models

    van Albada, S. J., Morales-Gregorio, A., Dickscheid, T., Goulas, A., Bakker, R., Bludau, S., Palm, G., Hilgetag, C-C. & Diesmann, M., 2022, Computational Modelling of the Brain: Modelling Approaches to Cells, Circuits and Networks. Giugliano, M., Negrello, M. & Linaro, D. (eds.). 1 ed. Vol. 1359. p. 201-234 34 p. (ADV EXP MED BIOL).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research

  41. Causal Influences Decouple From Their Underlying Network Structure In Echo State Networks

    Fakhar, K., Hadäghi, F. & Hilgetag, C-C., 2022, 2022 International Joint Conference on Neural Networks (IJCNN): 2022 conference proceedings. 1 ed. Piscataway, NJ: IEEE, Vol. 2022. p. 1-8 8 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  42. Intrinsic functional brain connectivity is resilient to chronic hypoperfusion caused by unilateral carotid artery stenosis

    Fischer, F., Malherbe, C., Schlemm, E., Schröder, J., Heinze, M., Cheng, B., Schulz, M., Fiehler, J., Larena-Avellaneda, A., Gerloff, C. & Thomalla, G., 2022, In: NEUROIMAGE-CLIN. 34, p. 103014 103014.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  43. 2021

  44. Modelling the effect of deep brain stimulation on cortico-subcortical networks in the context of freezing of gait in Parkinson’s Disease

    Popova, M., Messe, A., Gulberti, A., Pötter-Nerger, M. & Hilgetag, C-C., 21.12.2021, In: J COMPUT NEUROSCI. 2021, 49, p. S86

    Research output: SCORING: Contribution to journal › Conference abstract in journal › Research › peer-review

  45. Dual NADPH oxidases DUOX1 and DUOX2 synthesize NAADP and are necessary for Ca2+ signaling during T cell activation

    Gu, F., Krüger, A., Roggenkamp, H. G., Alpers, R., Lodygin, D., Jaquet, V., Möckl, F., Hernandez C, L. C., Winterberg, K., Bauche, A., Rosche, A., Grasberger, H., Kao, J. Y., Schetelig, D., Werner, R., Schröder, K., Carty, M., Bowie, A. G., Huber, S., Meier, C., Mittrücker, H-W., Heeren, J., Krause, K-H., Flügel, A., Diercks, B-P. & Guse, A. H., 16.11.2021, In: SCIENCE SIGNALING. 14, 709, eabe3800.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  46. Deep Learning-Based Automated Thrombolysis in Cerebral Infarction Scoring: A Timely Proof-of-Principle Study

    Nielsen, M., Waldmann, M., Frölich, A. M., Flottmann, F., Hristova, E., Bendszus, M., Seker, F., Fiehler, J., Sentker, T. & Werner, R., 11.2021, In: STROKE. 52, 11, p. 3497-3504 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  47. Time-Dependent Image Restoration of Low-SNR Live-Cell Ca2+ Fluorescence Microscopy Data

    Woelk, L-M., Kannabiran, S. A., Brock, V. J., Gee, C. E., Lohr, C., Guse, A. H., Diercks, B-P. & Werner, R., 30.10.2021, In: INT J MOL SCI. 22, 17 p., 11792.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  48. Two classes of functional connectivity in dynamical processes in networks

    Voutsa, V., Battaglia, D., Bracken, L. J., Brovelli, A., Costescu, J., Díaz Muñoz, M., Fath, B. D., Funk, A., Guirro, M., Hein, T., Kerschner, C., Kimmich, C., Lima, V., Messé, A., Parsons, A. J., Perez, J., Pöppl, R., Prell, C., Recinos, S., Shi, Y., Tiwari, S., Turnbull, L., Wainwright, J., Waxenecker, H. & Hütt, M. T., 01.10.2021, In: J R SOC INTERFACE. 18, 183, p. 20210486 20210486.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  49. Bio-instantiated recurrent neural networks: Integrating neurobiology-based network topology in artificial networks

    Goulas, A., Damicelli, F. & Hilgetag, C. C., 10.2021, In: NEURAL NETWORKS. 142, p. 608-618 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  50. First clinical evaluation of breathing controlled four-dimensional computed tomography imaging

    Szkitsak, J., Werner, R., Fernolendt, S., Schwarz, A., Ott, O. J., Fietkau, R., Hofmann, C. & Bert, C., 10.2021, In: PHYS IMAG RADIAT ONC. 20, p. 56-61 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  51. Game-theoretical mapping of fundamental brain functions based on lesion deficits in acute stroke

    Malherbe, C., Cheng, B., Königsberg, A., Cho, T-H., Ebinger, M., Endres, M., Fiebach, J. B., Fiehler, J., Galinovic, I., Puig, J., Thijs, V., Lemmens, R., Muir, K. W., Nighoghossian, N., Pedraza, S., Simonsen, C. Z., Wouters, A., Gerloff, C., Hilgetag, C. C. & Thomalla, G., 02.09.2021, In: BRAIN COMMUN. 3, 3, p. fcab204

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  52. Functional connectivity changes in cerebral small vessel disease - a systematic review of the resting-state MRI literature

    Schulz, M., Malherbe, C., Cheng, B., Thomalla, G. & Schlemm, E., 05.05.2021, In: BMC MED. 19, 1, p. 103

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  53. An architectonic type principle in the development of laminar patterns of cortico-cortical connections

    Beul, S. F., Goulas, A. & Hilgetag, C. C., 05.2021, In: BRAIN STRUCT FUNCT. 226, 4, p. 979-987 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  54. Multi-scale fully convolutional neural networks for histopathology image segmentation: From nuclear aberrations to the global tissue architecture

    Schmitz, R., Madesta, F., Nielsen, M., Krause, J., Steurer, S., Werner, R. & Rösch, T., 05.2021, In: MED IMAGE ANAL. 70, p. 101996 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  55. Spatio-temporal feature learning with reservoir computing for T-cell segmentation in live-cell Ca2+ fluorescence microscopy

    Hadaeghi, F., Diercks, B-P., Schetelig, D., Damicelli, F., Wolf, I. M. A. & Werner, R., 15.04.2021, In: SCI REP-UK. 11, 1, 8233.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  56. A Connectomic Hypothesis for the Hominization of the Brain

    Changeux, J-P., Goulas, A. & Hilgetag, C. C., 31.03.2021, In: CEREB CORTEX. 31, 5, p. 2425-2449 25 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  57. HN1L/JPT2: A signaling protein that connects NAADP generation to Ca2+ microdomain formation

    Roggenkamp, H. G., Khansahib, I., Hernandez C, L. C., Zhang, Y., Lodygin, D., Krüger, A., Gu, F., Möckl, F., Löhndorf, A., Wolters, V., Woike, D., Rosche, A., Bauche, A., Schetelig, D., Werner, R., Schlüter, H., Failla, A. V., Meier, C., Fliegert, R., Walseth, T. F., Flügel, A., Diercks, B-P. & Guse, A. H., 23.03.2021, In: SCI SIGNAL. 14, 675

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  58. Imaging evolution of the primate brain: the next frontier?

    Friedrich, P., Forkel, S. J., Amiez, C., Balsters, J. H., Coulon, O., Fan, L., Goulas, A., Hadj-Bouziane, F., Hecht, E. E., Heuer, K., Jiang, T., Latzman, R. D., Liu, X., Loh, K. K., Patil, K. R., Lopez-Persem, A., Procyk, E., Sallet, J., Toro, R., Vickery, S., Weis, S., Wilson, C. R. E., Xu, T., Zerbi, V., Eickoff, S. B., Margulies, D. S., Mars, R. B. & Thiebaut de Schotten, M., 03.2021, In: NEUROIMAGE. 228, p. 117685

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  59. The natural axis of transmitter receptor distribution in the human cerebral cortex

    Goulas, A., Changeux, J-P., Wagstyl, K., Amunts, K., Palomero-Gallagher, N. & Hilgetag, C. C., 19.01.2021, In: P NATL ACAD SCI USA. 118, 3, e2020574118.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  60. Comparison of intelligent 4D CT sequence scanning and conventional spiral 4D CT: a first comprehensive phantom study

    Werner, R., Szkitsak, J., Sentker, T., Madesta, F., Schwarz, A., Fernolendt, S., Vornehm, M., Gauer, T., Bert, C. & Hofmann, C., 08.01.2021, In: PHYS MED BIOL. 66, 1, 10 p., 015004.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  61. PAIP 2019: Liver cancer segmentation challenge

    Kim, Y. J., Jang, H., Lee, K., Park, S., Min, S-G., Hong, C., Park, J. H., Lee, K., Kim, J., Hong, W., Jung, H., Liu, Y., Rajkumar, H., Khened, M., Krishnamurthi, G., Yang, S., Wang, X., Han, C. H., Kwak, J. T., Ma, J., Tang, Z., Marami, B., Zeineh, J., Zhao, Z., Heng, P-A., Schmitz, R., Madesta, F., Rösch, T., Werner, R., Tian, J., Puybareau, E., Bovio, M., Zhang, X., Zhu, Y., Chun, S. Y., Jeong, W-K., Park, P. & Choi, J., 01.2021, In: MED IMAGE ANAL. 67, p. 101854 16 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  62. Reduktion der Kalibrierungszeit für die Magnetpartikelbildgebung mittels Deep Learning

    Baltruschat, I. M., Szwargulski, P., Griese, F., Grosser, M., Werner, R. & Knopp, T., 2021, Bildverarbeitung für die Medizin 2021 - Proceedings, German Workshop on Medical Image Computing, 2021. Palm, C., Handels, H., Maier-Hein, K., Deserno, T. M., Maier, A. & Tolxdorff, T. (eds.). Springer Science and Business Media Deutschland GmbH, p. 337 1 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › Conference contribution - Article for conference › Research › peer-review

  63. Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy

    Li, D., Wang, G., Werner, R., Xie, H., Guan, J-S. & Hilgetag, C-C., 2021, In: FRONT NEUROINFORM. 15, p. 674439 674439.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  64. 2020

  65. Cross-species functional alignment reveals evolutionary hierarchy within the connectome

    Xu, T., Nenning, K-H., Schwartz, E., Hong, S-J., Vogelstein, J. T., Goulas, A., Fair, D. A., Schroeder, C. E., Margulies, D. S., Smallwood, J., Milham, M. P. & Langs, G., 12.2020, In: NEUROIMAGE. 223, p. 117346

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  66. Structural integrity of white matter tracts as a predictor of acute ischemic stroke outcome

    Rajashekar, D., Mouchès, P., Fiehler, J., Menon, B. K., Goyal, M., Demchuk, A. M., Hill, M. D., Dukelow, S. P. & Forkert, N. D., 12.2020, In: INT J STROKE. 15, 9, p. 965-972 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  67. Digital Health meets Hamburg integrated medical degree program iMED: Concept and introduction of the new interdisciplinary 2nd track Digital Health

    Werner, R., Henningsen, M., Schmitz, R., Guse, A. H., Augustin, M. & Gauer, T., 16.11.2020, In: GMS Journal for Medical Education. 37, 6, p. Doc61 10 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Education › peer-review

  68. Self-contained deep learning-based boosting of 4D cone-beam CT reconstruction

    Madesta, F., Sentker, T., Gauer, T. & Werner, R., 11.2020, In: MED PHYS. 47, 11, p. 5619-5631 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  69. Künstliche Intelligenz in der Medizin

    Werner, R. & Schmitz, R., 21.10.2020, Digitale Medizin. Matusiewicz, D., Henningsen, M. & Ehlers, J. P. (eds.). 1 ed. Medizinisch Wissenschaftliche Verlagsgesellschaft, p. 125-138 14 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  70. 3d-SMRnet: Achieving a New Quality of MPI System Matrix Recovery by Deep Learning

    Baltruschat, I. M., Szwargulski, P. K., Griese, F., Grosser, M., Werner, R. & Knopp, T., 10.2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part II. 1 ed. Springer Nature Switzerland, p. 74-82 9 p. (Lecture Notes in Computer Science (LNCS); no. 12262).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  71. Systematic modelling of the development of laminar projection origins in the cerebral cortex: Interactions of spatio-temporal patterns of neurogenesis and cellular heterogeneity

    Beul, S. F. & Hilgetag, C. C., 10.2020, In: PLOS COMPUT BIOL. 16, 10, p. e1007991

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  72. Time Matters: Handling Spatio-Temporal Perfusion Information for Automated TICI Scoring

    Nielsen, M., Waldmann, M., Sentker, T., Frölich, A., Fiehler, J. & Werner, R., 10.2020, MICCAI 2020. 1 ed. Springer Nature Switzerland, Vol. 12266. p. 86-96 11 p. (Lecture Notes in Computer Science (LNCS)).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  73. Widening the Focus: Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies

    Madesta, F., Schmitz, R., Rösch, T. & Werner, R., 10.2020, MICCAI 2020. 1 ed. Springer Nature Switzerland, Vol. 12264. p. 289-298 10 p. (Lecture Notes in Computer Science (LNCS)).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  74. Automatic arterial input function selection in CT and MR perfusion datasets using deep convolutional neural networks

    Winder, A., d’Esterre, C. D., Menon, B. K., Fiehler, J. & Forkert, N. D., 01.09.2020, In: MED PHYS. 47, 9, p. 4199-4211 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  75. Shaping brain structure: Genetic and phylogenetic axes of macroscale organization of cortical thickness

    Valk, S. L., Xu, T., Margulies, D. S., Masouleh, S. K., Paquola, C., Goulas, A., Kochunov, P., Smallwood, J., Yeo, B. T. T., Bernhardt, B. C. & Eickhoff, S. B., 09.2020, In: SCI ADV. 6, 39

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  76. Game theoretical mapping of white matter contributions to visuospatial attention in stroke patients with hemineglect

    Toba, M. N., Zavaglia, M., Malherbe, C., Moreau, T., Rastelli, F., Kaglik, A., Valabrègue, R., Pradat-Diehl, P., Hilgetag, C. C. & Valero-Cabré, A., 01.08.2020, In: HUM BRAIN MAPP. 41, 11, p. 2926-2950 25 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  77. 4D CT image artifacts affect local control in SBRT of lung and liver metastases

    Sentker, T., Schmidt, V., Ozga, A-K., Petersen, C., Madesta, F., Hofmann, C., Werner, R. & Gauer, T., 07.2020, In: RADIOTHER ONCOL. 148, p. 229-234 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  78. Segmentation-Based Blood Flow Parameter Refinement in Cerebrovascular Structures Using 4-D Arterial Spin Labeling MRA

    Phellan, R., Lindner, T., Helle, M., Falcao, A. X., Yasuda, C. L., Sokolska, M., Jager, R. H. & Forkert, N. D., 07.2020, In: IEEE T BIO-MED ENG. 67, 7, p. 1936-1946 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  79. Individual differences in local functional brain connectivity affect TMS effects on behavior

    Gießing, C., Alavash, M., Herrmann, C. S., Hilgetag, C. C. & Thiel, C. M., 26.06.2020, In: SCI REP-UK. 10, 1, p. 10422

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  80. Intelligent 4D CT sequence scanning (i4DCT): First scanner prototype implementation and phantom measurements of automated breathing signal-guided 4D CT

    Werner, R., Sentker, T., Madesta, F., Schwarz, A., Vornehm, M., Gauer, T. & Hofmann, C., 06.2020, In: MED PHYS. 47, 6, p. 2408-2412 5 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  81. Reply: Inhibition between human brain areas or methodological artefact?

    Toba, M. N., Malherbe, C., Godefroy, O., Rushmore, R. J., Zavaglia, M., Maatoug, R., Mandonnet, E., Valero-Cabré, A. & Hilgetag, C. C., 05.2020, In: BRAIN. 143, 5, p. e39 e39.

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  82. Technological quality requirements for stereotactic radiotherapy: Expert review group consensus from the DGMP Working Group for Physics and Technology in Stereotactic Radiotherapy

    Schmitt, D., Blanck, O., Gauer, T., Fix, M. K., Brunner, T. B., Fleckenstein, J., Loutfi-Krauss, B., Manser, P., Werner, R., Wilhelm, M-L., Baus, W. W. & Moustakis, C., 05.2020, In: STRAHLENTHER ONKOL. 196, 5, p. 421-443 23 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  83. 'Hierarchy' in the organization of brain networks

    Hilgetag, C. C. & Goulas, A., 13.04.2020, In: PHILOS T R SOC B. 375, 1796, p. 20190319

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  84. Unifying the essential concepts of biological networks: biological insights and philosophical foundations

    Kostić, D., Hilgetag, C. C. & Tittgemeyer, M., 13.04.2020, In: PHILOS T R SOC B. 375, 1796, p. 20190314

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  85. Parcellation influence on the connectivity-based structure-function relationship in the human brain

    Messé, A., 01.04.2020, In: HUM BRAIN MAPP. 41, 5, p. 1167-1180 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  86. Reservoir Computing for Jurkat T-cell Segmentation in High Resolution Live Cell Ca2+ Fluorescence Microscopy

    Hadäghi, F., Diercks, B-P., Wolf, I. & Werner, R., 01.04.2020, In: Proc IEEE ISBI 2020. 1, p. 1587-1591 5 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  87. Revisiting 'brain modes' in a new computational era: approaches for the characterization of brain-behavioural associations

    Toba, M. N., Godefroy, O., Rushmore, R. J., Zavaglia, M., Maatoug, R., Hilgetag, C. C. & Valero-Cabré, A., 01.04.2020, In: BRAIN. 143, 4, p. 1088-1098 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  88. Ischemic lesion growth in acute stroke: Water uptake quantification distinguishes between edema and tissue infarct

    Broocks, G., Hanning, U., Faizy, T. D., Scheibel, A., Nawabi, J., Schön, G., Forkert, N. D., Langner, S., Fiehler, J., Gellißen, S. & Kemmling, A., 04.2020, In: J CEREBR BLOOD F MET. 40, 4, p. 823-832 10 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  89. Correction: Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features

    Grosser, M., Gellißen, S., Borchert, P., Sedlacik, J., Nawabi, J., Fiehler, J. & Forkert, N. D., 13.03.2020, In: PLOS ONE. 15, 3, p. e0230653

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  90. Combining Direct 3D Volume Rendering and Magnetic Particle Imaging to Advance Radiation-Free Real-Time 3D Guidance of Vascular Interventions

    Weller, D., Salamon, J. M., Frölich, A., Möddel, M., Knopp, T. & Werner, R., 02.2020, In: CARDIOVASC INTER RAD. 43, 2, p. 322-330 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  91. Skin Lesion Classification Using CNNs with Patch-Based Attention and Diagnosis-Guided Loss Weighting

    Gessert, N., Sentker, T., Madesta, F., Schmitz, R., Kniep, H., Baltruschat, I., Werner, R. & Schlaefer, A., 02.2020, In: IEEE T BIO-MED ENG. 67, 2, p. 495-503 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  92. Perturbation-driven paradoxical facilitation of visuo-spatial function: Revisiting the 'Sprague effect'

    Valero-Cabré, A., Toba, M. N., Hilgetag, C. C. & Rushmore, R. J., 01.2020, In: CORTEX. 122, p. 10-39 30 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  93. Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features

    Grosser, M., Gellißen, S., Borchert, P., Sedlacik, J., Nawabi, J., Fiehler, J. & Forkert, N. D., 2020, In: PLOS ONE. 15, 1, p. e0228113

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  94. Künstliche Intelligenz in der Endoskopie: Neuronale Netze und maschinelles Sehen – Techniken und Perspektiven (reprint Z Gastroenterol 2019; 57(06): 767-780)

    Schmitz, R., Werner, R. & Rösch, T., 2020, In: Endo-Praxis. 2020, 36, p. 30-43

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  95. Skin lesion classification using ensembles of multi-resolution EfficientNets with meta data

    Gessert, N., Nielsen, M., Shaikh, M., Werner, R. & Schlaefer, A., 2020, In: METHODSX. 7, 7, p. 100864 8 p., 100864.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  96. The Impact of Covariates in Voxel-Wise Lesion-Symptom Mapping

    Rajashekar, D., Wilms, M., Hecker, K. G., Hill, M. D., Dukelow, S., Fiehler, J. & Forkert, N. D., 2020, In: FRONT NEUROL. 11, p. 854

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  97. 2019

  98. Altered topology of large-scale structural brain networks in chronic stroke

    Cheng, B., Schlemm, E., Schulz, R., Bönstrup, M., Messe, A., Hilgetag, C-C., Gerloff, C. & Thomalla, G., 04.10.2019, In: BRAIN COMMUN. 2019, 1, p. 1-13

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  99. The architecture of mammalian cortical connectomes in light of the theory of the dual origin of the cerebral cortex

    Goulas, A., Margulies, D. S., Bezgin, G. & Hilgetag, C. C., 09.2019, In: CORTEX. 118, p. 244-261 18 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  100. Intelligent 4D CT sequence scanning (i4DCT): Concept and performance evaluation

    Werner, R., Sentker, T., Madesta, F., Gauer, T. & Hofmann, C., 13.08.2019, In: MED PHYS. 46, 8, p. 3462-3474 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  101. Cortical thickness and cognitive performance in asymptomatic unilateral carotid artery stenosis

    Nickel, A., Kessner, S., Niebuhr, A., Schröder, J., Malherbe, C., Fischer, F., Heinze, M., Cheng, B., Fiehler, J., Pinnschmidt, H., Larena-Avellaneda, A., Gerloff, C. & Thomalla, G., 25.06.2019, In: BMC CARDIOVASC DISOR. 19, 1, p. 154

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  102. Cortical and thalamic connectivity of occipital visual cortical areas 17, 18, 19 and 21 of the domestic ferret (Mustela putorius furo)

    Dell, L-A., Innocenti, G. M., Hilgetag, C. C. & Manger, P. R., 01.06.2019, In: J COMP NEUROL. 527, 8, p. 1293-1314 22 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  103. Cortical and thalamic connectivity of posterior parietal visual cortical areas PPc and PPr of the domestic ferret (Mustela putorius furo)

    Dell, L-A., Innocenti, G. M., Hilgetag, C. C. & Manger, P. R., 01.06.2019, In: J COMP NEUROL. 527, 8, p. 1315-1332 18 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  104. Cortical and thalamic connectivity of temporal visual cortical areas 20a and 20b of the domestic ferret (Mustela putorius furo)

    Dell, L-A., Innocenti, G. M., Hilgetag, C. C. & Manger, P. R., 01.06.2019, In: J COMP NEUROL. 527, 8, p. 1333-1347 15 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  105. Künstliche Intelligenz in der Endoskopie: Neuronale Netze und maschinelles Sehen – Techniken und Perspektiven

    Schmitz, R., Werner, R. & Rösch, T., 06.2019, In: Z GASTROENTEROL. 57, 6, p. 767-780 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  106. Spatiotemporal ontogeny of brain wiring

    Goulas, A., Betzel, R. F. & Hilgetag, C. C., 06.2019, In: SCI ADV. 5, 6, p. eaav9694

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

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