Research ExplorerResearch UnitsInstitute of Medical Systems Biology Publications

Institute of Medical Systems Biology

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Publications

  1. 2017

  2. Severe DCM phenotype of patient harboring RBM20 mutation S635A can be modeled by patient-specific induced pluripotent stem cell-derived cardiomyocytes

    Streckfuss-Bömeke, K., Tiburcy, M., Fomin, A., Luo, X., Li, W., Fischer, C., Özcelik, C., Perrot, A., Sossalla, S., Haas, J., Vidal, R. O., Rebs, S., Khadjeh, S., Meder, B., Bonn, S., Linke, W. A., Zimmermann, W-H., Hasenfuss, G. & Guan, K., 12.2017, In: J MOL CELL CARDIOL. 113, p. 9-21 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  3. The landscape of human mutually exclusive splicing

    Hatje, K., Rahman, R-U., Vidal, R. O., Simm, D., Hammesfahr, B., Bansal, V., Rajput, A., Mickael, M. E., Sun, T., Bonn, S. & Kollmar, M., 14.12.2017, In: MOL SYST BIOL. 13, 12, 959.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  4. 2018

  5. Upregulation of miR-370 and miR-543 is associated with reduced expression of heat shock protein 40 in spinocerebellar ataxia type 3

    Evert, B. O., Nalavade, R., Jungverdorben, J., Matthes, F., Weber, S., Rajput, A., Bonn, S., Brüstle, O., Peitz, M. & Krauß, S., 2018, In: PLOS ONE. 13, 8, p. e0201794

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  6. Regional and subtype-dependent miRNA signatures in sporadic Creutzfeldt-Jakob disease are accompanied by alterations in miRNA silencing machinery and biogenesis

    Llorens, F., Thüne, K., Martí, E., Kanata, E., Dafou, D., Díaz-Lucena, D., Vivancos, A., Shomroni, O., Zafar, S., Schmitz, M., Michel, U., Fernández-Borges, N., Andréoletti, O., Del Río, J. A., Díez, J., Fischer, A., Bonn, S., Sklaviadis, T., Torres, J. M., Ferrer, I. & Zerr, I., 22.01.2018, In: PLOS PATHOG. 14, 1, p. e1006802

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  7. Oasis 2: improved online analysis of small RNA-seq data

    Rahman, R-U., Gautam, A., Bethune, J., Sattar, A., Fiosins, M., Magruder, D. S., Capece, V., Shomroni, O. & Bonn, S., 14.02.2018, In: BMC BIOINFORMATICS. 19, 1, p. 54

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  8. Epigenetic alterations in longevity regulators, reduced life span, and exacerbated aging-related pathology in old father offspring mice

    Xie, K., Ryan, D. P., Pearson, B. L., Henzel, K. S., Neff, F., Vidal, R. O., Hennion, M., Lehmann, I., Schleif, M., Schröder, S., Adler, T., Rathkolb, B., Rozman, J., Schütz, A-L., Prehn, C., Mickael, M. E., Weiergräber, M., Adamski, J., Busch, D. H., Ehninger, G., Matynia, A., Jackson, W. S., Wolf, E., Fuchs, H., Gailus-Durner, V., Bonn, S., Hrabě de Angelis, M. & Ehninger, D., 06.03.2018, In: P NATL ACAD SCI USA. 115, 10, p. E2348-E2357

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  9. Molecular Evolution and Functional Divergence of the IgLON Family

    Kubick, N., Brösamle, D. & Mickael, M-E., 21.05.2018, In: EVOL BIOINFORM. 14, p. 1176934318775081

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  10. Targeting myelin lipid metabolism as a potential therapeutic strategy in a model of CMT1A neuropathy

    Fledrich, R., Abdelaal, T., Rasch, L., Bansal, V., Schütza, V., Brügger, B., Lüchtenborg, C., Prukop, T., Stenzel, J., Rahman, R. U., Hermes, D., Ewers, D., Möbius, W., Ruhwedel, T., Katona, I., Weis, J., Klein, D., Martini, R., Brück, W., Müller, W. C., Bonn, S., Bechmann, I., Nave, K. A., Stassart, R. M. & Sereda, M. W., 02.08.2018, In: NAT COMMUN. 9, 1, p. 3025

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  11. Genome-wide association study results for educational attainment aid in identifying genetic heterogeneity of schizophrenia

    Bansal, V., Mitjans, M., Burik, C. A. P., Linnér, R. K., Okbay, A., Rietveld, C. A., Begemann, M., Bonn, S., Ripke, S., de Vlaming, R., Nivard, M. G., Ehrenreich, H. & Koellinger, P. D., 06.08.2018, In: NAT COMMUN. 9, 1, p. 3078

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  12. Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions

    Fornasiero, E. F., Mandad, S., Wildhagen, H., Alevra, M., Rammner, B., Keihani, S., Opazo, F., Urban, I., Ischebeck, T., Sakib, M. S., Fard, M. K., Kirli, K., Centeno, T. P., Vidal, R. O., Rahman, R-U., Benito, E., Fischer, A., Dennerlein, S., Rehling, P., Feussner, I., Bonn, S., Simons, M., Urlaub, H. & Rizzoli, S. O., 12.10.2018, In: NAT COMMUN. 9, 1, p. 4230

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  13. The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain

    Mandad, S., Rahman, R-U., Centeno, T. P., Vidal, R. O., Wildhagen, H., Rammner, B., Keihani, S., Opazo, F., Urban, I., Ischebeck, T., Kirli, K., Benito, E., Fischer, A., Yousefi, R. Y., Dennerlein, S., Rehling, P., Feussner, I., Urlaub, H., Bonn, S., Rizzoli, S. O. & Fornasiero, E. F., 15.11.2018, In: SCI REP-UK. 8, 1, p. 16913

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  14. 2019

  15. DNA Methyltransferase 1 Controls Nephron Progenitor Cell Renewal and Differentiation

    Wanner, N., Vornweg, J., Combes, A., Wilson, S., Plappert, J., Rafflenbeul, G., Puelles, V. G., Rahman, R-U., Liwinski, T., Lindner, S., Grahammer, F., Kretz, O., Wlodek, M. E., Romano, T., Moritz, K. M., Boerries, M., Busch, H., Bonn, S., Little, M. H., Bechtel-Walz, W. & Huber, T. B., 01.2019, In: J AM SOC NEPHROL. 30, 1, p. 63-78 16 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  16. Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice

    Kaczmarczyk, L., Bansal, V., Rajput, A., Rahman, R-U., Krzyżak, W., Degen, J., Poll, S., Fuhrmann, M., Bonn, S. & Jackson, W. S., 08.2019, In: PLOS BIOL. 17, 8, p. e3000374

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  17. Violent aggression predicted by multiple pre-adult environmental hits

    Mitjans, M., Seidel, J., Begemann, M., Bockhop, F., Moya-Higueras, J., Bansal, V., Wesolowski, J., Seelbach, A., Ibáñez, M. I., Kovacevic, F., Duvar, O., Fañanás, L., Wolf, H-U., Ortet, G., Zwanzger, P., Klein, V., Lange, I., Tänzer, A., Dudeck, M., Penke, L., van Elst, L. T., Bittner, R. A., Schmidmeier, R., Freese, R., Müller-Isberner, R., Wiltfang, J., Bliesener, T., Bonn, S., Poustka, L., Müller, J. L., Arias, B. & Ehrenreich, H., 10.2019, In: MOL PSYCHIATR. 24, 10, p. 1549-1564 16 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  18. The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43

    Keihani, S., Kluever, V., Mandad, S., Bansal, V., Rahman, R., Fritsch, E., Gomes, L. C., Gärtner, A., Kügler, S., Urlaub, H., Wren, J. D., Bonn, S., Rizzoli, S. O. & Fornasiero, E. F., 18.12.2019, In: SCI ADV. 5, 12, p. eaay2670

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  19. 2020

  20. Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1)

    Samir, M., Vidal, R. O., Abdallah, F., Capece, V., Seehusen, F., Geffers, R., Hussein, A., Ali, A. A. H., Bonn, S. & Pessler, F., 01.2020, In: RNA BIOL. 17, 1, p. 112-124 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  21. SEAweb: the small RNA Expression Atlas web application

    Rahman, R-U., Liebhoff, A-M., Bansal, V., Fiosins, M., Rajput, A., Sattar, A., Magruder, D. S., Madan, S., Sun, T., Gautam, A., Heins, S., Liwinski, T., Bethune, J., Trenkwalder, C., Fluck, J., Mollenhauer, B. & Bonn, S., 08.01.2020, In: NUCLEIC ACIDS RES. 48, D1, p. D204-D219

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  22. Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks

    Marouf, M., Machart, P., Bansal, V., Kilian, C., Magruder, D. S., Krebs, C. F. & Bonn, S., 09.01.2020, In: NAT COMMUN. 11, 1, p. 166

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  23. Explainable Deep Learning for Augmentation of Small RNA Expression Profiles

    Fiosina, J., Fiosins, M. & Bonn, S., 01.02.2020, In: J COMPUT BIOL.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  24. CRISPLD1: a novel conserved target in the transition to human heart failure

    Khadjeh, S., Hindmarsh, V., Weber, F., Cyganek, L., Vidal, R. O., Torkieh, S., Streckfuss-Bömeke, K., Lbik, D., Tiburcy, M., Mohamed, B. A., Bonn, S., Toischer, K. & Hasenfuss, G., 07.03.2020, In: BASIC RES CARDIOL. 115, 3, p. 27

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  25. Functional hypoxia drives neuroplasticity and neurogenesis via brain erythropoietin

    Wakhloo, D., Scharkowski, F., Curto, Y., Javed Butt, U., Bansal, V., Steixner-Kumar, A. A., Wüstefeld, L., Rajput, A., Arinrad, S., Zillmann, M. R., Seelbach, A., Hassouna, I., Schneider, K., Qadir Ibrahim, A., Werner, H. B., Martens, H., Miskowiak, K., Wojcik, S. M., Bonn, S., Nacher, J., Nave, K-A. & Ehrenreich, H., 09.03.2020, In: NAT COMMUN. 11, 1, p. 1313

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  26. Deep learning-based cell composition analysis from tissue expression profiles

    Menden, K., Marouf, M., Oller, S., Dalmia, A., Magruder, D. S., Kloiber, K., Heutink, P. & Bonn, S., 22.07.2020, In: SCI ADV. 6, 30, p. eaba2619

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  27. Pathogen-induced tissue-resident memory TH17 (TRM17) cells amplify autoimmune kidney disease

    Krebs, C. F., Reimers, D., Zhao, Y., Paust, H-J., Bartsch, P., Nuñez, S., Rosemblatt, M. V., Hellmig, M., Kilian, C., Borchers, A., Enk, L. U. B., Zinke, M., Becker, M., Schmid, J., Klinge, S., Wong, M. N., Puelles, V. G., Schmidt, C., Bertram, T., Stumpf, N., Hoxha, E., Meyer-Schwesinger, C., Lindenmeyer, M. T., Cohen, C. D., Rink, M., Kurts, C., Franzenburg, S., Koch-Nolte, F., Turner, J-E., Riedel, J-H., Huber, S., Gagliani, N., Huber, T. B., Wiech, T., Rohde, H., Bono, M. R., Bonn, S., Panzer, U. & Mittrücker, H-W., 07.08.2020, In: SCI IMMUNOL. 5, 50, eaba4163.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  28. SUMOylation controls the neurodevelopmental function of the transcription factor Zbtb20

    Ripamonti, S., Shomroni, O., Rhee, J. S., Chowdhury, K., Jahn, O., Hellmann, K. P., Bonn, S., Brose, N. & Tirard, M., 09.2020, In: J NEUROCHEM. 154, 6, p. 647-661 15 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  29. Neuropathology of patients with COVID-19 in Germany: a post-mortem case series

    Matschke, J., Lütgehetmann, M., Hagel, C., Sperhake, J. P., Schröder, A. S., Edler, C., Mushumba, H., Fitzek, A., Allweiss, L., Dandri, M., Dottermusch, M., Heinemann, A., Pfefferle, S., Schwabenland, M., Sumner Magruder, D., Bonn, S., Prinz, M., Gerloff, C., Püschel, K., Krasemann, S., Aepfelbacher, M. & Glatzel, M., 11.2020, In: LANCET NEUROL. 19, 11, p. 919-929 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  30. 2021

  31. Protein phosphorylation in depolarized synaptosomes: Dissecting primary effects of calcium from synaptic vesicle cycling

    Silbern, I., Pan, K-T., Fiosins, M., Bonn, S., Rizzoli, S. O., Fornasiero, E. F., Urlaub, H. & Jahn, R., 12.02.2021, In: MOL CELL PROTEOMICS. 20, 100061.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  32. Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients

    Zhao, Y., Kilian, C., Turner, J. E., Bosurgi, L., Roedl, K., Bartsch, P., Gnirck, A. C., Cortesi, F., Schultheiß, C., Hellmig, M., Enk, L. U. B., Hausmann, F., Borchers, A., Wong, M. N., Paust, H. J., Siracusa, F., Scheibel, N., Herrmann, M., Rosati, E., Bacher, P., Kylies, D., Jarczak, D., Lütgehetmann, M., Pfefferle, S., Steurer, S., Zur Wiesch, J. S., Puelles, V. G., Sperhake, J. P., Addo, M. M., Lohse, A. W., Binder, M., Huber, S., Huber, T. B., Kluge, S., Bonn, S., Panzer, U., Gagliani, N. & Krebs, C. F., 23.02.2021, In: SCI IMMUNOL. 6, 56, eabf6692.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  33. Algorithmic advances in machine learning for single-cell expression analysis

    Oller, S., Kloiber, K., Machart, P. & Bonn, S., 03.2021, In: CURR OPIN SYST BIOL. 2021, 25, p. 27-33 7 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  34. Altered gut microbial metabolism of essential nutrients in primary sclerosing cholangitis

    Kummen, M., Thingholm, L. B., Rühlemann, M. C., Holm, K., Hansen, S. H., Moitinho-Silva, L., Liwinski, T., Zenouzi, R., Storm-Larsen, C., Midttun, Ø., McCann, A., Ueland, P. M., Høivik, M. L., Vesterhus, M., Trøseid, M., Laudes, M., Lieb, W., Karlsen, T. H., Bang, C., Schramm, C., Franke, A. & Hov, J. R., 04.2021, In: GASTROENTEROLOGY. 160, 5, p. 1784-1798.e0 15 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  35. Deep learning-based molecular morphometrics for kidney biopsies

    Zimmermann, M., Klaus, M., Wong, M. N., Thebille, A-K., Gernhold, L., Kuppe, C., Halder, M., Kranz, J., Wanner, N., Braun, F., Wulf, S., Wiech, T., Panzer, U., Krebs, C. F., Hoxha, E., Kramann, R., Huber, T. B., Bonn, S. & Puelles, V. G., 08.04.2021, In: JCI INSIGHT. 6, 7, p. e144779

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  36. Interactive gene networks with KNIT

    Magruder, D. S., Liebhoff, A. M., Bethune, J. & Bonn, S., 19.04.2021, In: BIOINFORMATICS. 37, 2, p. 276-278 3 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  37. Hippocampal neurons respond to brain activity with functional hypoxia

    Butt, U. J., Steixner-Kumar, A. A., Depp, C., Sun, T., Hassouna, I., Wüstefeld, L., Arinrad, S., Zillmann, M. R., Schopf, N., Fernandez Garcia-Agudo, L., Mohrmann, L., Bode, U., Ronnenberg, A., Hindermann, M., Goebbels, S., Bonn, S., Katschinski, D. M., Miskowiak, K. W., Nave, K-A. & Ehrenreich, H., 06.2021, In: MOL PSYCHIATR. 26, 6, p. 1790-1807 18 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  38. Pro-cachectic factors link experimental and human chronic kidney disease to skeletal muscle wasting programs

    Solagna, F., Tezze, C., Lindenmeyer, M. T., Lu, S., Wu, G., Liu, S., Zhao, Y., Mitchell, R., Meyer, C., Omairi, S., Kilic, T., Paolini, A., Ritvos, O., Pasternack, A., Matsakas, A., Kylies, D., Wiesch, J. S. Z., Turner, J-E., Wanner, N., Nair, V., Eichinger, F., Menon, R., Martin, I. V., Klinkhammer, B. M., Hoxha, E., Cohen, C. D., Tharaux, P-L., Boor, P., Ostendorf, T., Kretzler, M., Sandri, M., Kretz, O., Puelles, V. G., Patel, K. & Huber, T. B., 01.06.2021, In: J CLIN INVEST. 131, 11, e135821.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  39. Deep Learning-Based Bias Transfer for Overcoming Laboratory Differences of Microscopic Images

    Thebille, A-K., Dietrich, E., Klaus, M., Gernhold, L., Lennartz, E. M. H., Kuppe, C., Kramann, R., Huber, T., Sauter, G., Puelles, V., Zimmermann, M. & Bonn, S., 06.07.2021, Annual Conference on Medical Image Understanding and Analysis: 25th Annual Conference, MIUA 2021, Oxford, United Kingdom, July 12–14, 2021, Proceedings. Papież, B. W., Yaqub, M., Jiao, J., Namburete, A. I. L. & Noble, J. A. (eds.). 1 ed. Oxford: Springer Nature Switzerland AG, p. 322-336 15 p.

    Research output: SCORING: Contribution to book/anthology › Conference contribution - Article for conference › Research › peer-review

  40. Histological activity despite normal ALT and IgG serum levels in patients with autoimmune hepatitis and cirrhosis

    Laschtowitz, A., Zachou, K., Lygoura, V., Pape, S., Derben, F., Jaeckel, E., Oller-Moreno, S., Weidemann, S., Krech, T., Piecha, F., Schön, G., Liebhoff, A-M., Al Tarrah, M., Heneghan, M., Drenth, J. P. H., Dalekos, G., Taubert, R., Lohse, A. W. & Schramm, C., 08.2021, In: JHEP REP. 3, 4, p. 100321

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  41. Single-cell biology to decode the immune cellular composition of kidney inflammation.

    Zhao, Y., Panzer, U., Bonn, S. & Krebs, C., 08.2021, In: CELL TISSUE RES. 385, 2, p. 435-443 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  42. DeepGRP: engineering a software tool for predicting genomic repetitive elements using Recurrent Neural Networks with attention

    Hausmann, F. & Kurtz, S., 23.08.2021, In: ALGORITHM MOL BIOL. 16, 1, p. 20 20.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  43. Landscape of T-cell repertoires with public COVID-19-associated T-cell receptors in pre-pandemic risk cohorts

    Simnica, D., Schultheiß, C., Mohme, M., Paschold, L., Willscher, E., Fitzek, A., Püschel, K., Matschke, J., Ciesek, S., Sedding, D. G., Zhao, Y., Gagliani, N., Maringer, Y., Walz, J. S., Heide, J., Schulze-Zur-Wiesch, J. & Binder, M., 28.08.2021, In: CLIN TRANSL IMMUNOL. 10, 9, p. e1340 e1340.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  44. Bias-invariant RNA-sequencing metadata annotation

    Wartmann, H., Heins, S., Kloiber, K. & Bonn, S., 22.09.2021, In: GIGASCIENCE. 10, 9, p. giab064

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  45. Neuronal cholesterol synthesis is essential for repair of chronically demyelinated lesions in mice

    Berghoff, S. A., Spieth, L., Sun, T., Hosang, L., Depp, C., Sasmita, A. O., Vasileva, M. H., Scholz, P., Zhao, Y., Krueger-Burg, D., Wichert, S., Brown, E. R., Michail, K., Nave, K-A., Bonn, S., Odoardi, F., Rossner, M., Ischebeck, T., Edgar, J. M. & Saher, G., 26.10.2021, In: CELL REP. 37, 4, 109889.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  46. Towards Explainable End-to-End Prostate Cancer Relapse Prediction from H&E Images Combining Self-Attention Multiple Instance Learning with a Recurrent Neural Network

    Dietrich, E., Fuhlert, P., Ernst, A., Sauter, G., Lennartz, E. M. H., Stiehl, S., Zimmermann, M. & Bonn, S., 26.11.2021, Machine Learning for Health (ML4H) 2021: Proceedings of Machine Learning Research LEAVE UNSET:1–16, 2021. Cornell University, Vol. 158. p. 38-53 16 p.

    Research output: SCORING: Contribution to book/anthology › Conference contribution - Poster › Research

  47. 2022

  48. Th17 cell plasticity towards a T-bet-dependent Th1 phenotype is required for bacterial control in Staphylococcus aureus infection

    Bartsch, P., Kilian, C., Hellmig, M., Paust, H-J., Borchers, A., Sivayoganathan, A., Enk, L., Zhao, Y., Shaikh, N., Büttner, H., Wong, M. N., Puelles, V. G., Wiech, T., Flavell, R., Huber, T. B., Turner, J-E., Bonn, S., Huber, S., Gagliani, N., Mittrücker, H-W., Rohde, H., Panzer, U. & Krebs, C. F., 04.2022, In: PLOS PATHOG. 18, 4, p. e1010430

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  49. Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice

    Kaczmarczyk, L., Schleif, M., Dittrich, L., Williams, R. H., Koderman, M., Bansal, V., Rajput, A., Schulte, T., Jonson, M., Krost, C., Testaquadra, F. J., Bonn, S. & Jackson, W. S., 08.2022, In: PLOS PATHOG. 18, 8, e1010747.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  50. Pregnancy-induced maternal microchimerism shapes neurodevelopment and behavior in mice

    Schepanski, S., Chini, M., Sternemann, V., Urbschat, C., Thiele, K., Sun, T., Zhao, Y., Poburski, M., Woestemeier, A., Thieme, M-T., Zazara, D. E., Alawi, M., Fischer, N., Heeren, J., Vladimirov, N., Woehler, A., Puelles, V. G., Bonn, S., Gagliani, N., Hanganu-Opatz, I. L. & Arck, P. C., 05.08.2022, In: NAT COMMUN. 13, 1, 4571.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  51. Correction: Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice

    Kaczmarczyk, L., Bansal, V., Rajput, A., Rahman, R-U., Krzyżak, W., Degen, J., Poll, S., Fuhrmann, M., Bonn, S. & Jackson, W. S., 01.11.2022, In: PLOS BIOL. 20, 11, e3001882.

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  52. ERR2 and ERR3 promote the development of gamma motor neuron functional properties required for proprioceptive movement control

    Khan, M. N., Cherukuri, P., Negro, F., Rajput, A., Fabrowski, P., Bansal, V., Lancelin, C., Lee, T-I., Bian, Y., Mayer, W. P., Akay, T., Müller, D., Bonn, S., Farina, D. & Marquardt, T., 21.12.2022, In: PLOS BIOL. 20, 12, e3001923.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  53. 2023

  54. Glucocorticoids target the CXCL9/CXCL10-CXCR3 axis and confer protection against immune-mediated kidney injury

    Riedel, J-H., Robben, L., Paust, H-J., Zhao, Y., Asada, N., Song, N., Peters, A., Kaffke, A., Borchers, A. C., Tiegs, G., Seifert, L., Tomas, N. M., Hoxha, E., Wenzel, U. O., Huber, T. B., Wiech, T., Turner, J-E., Krebs, C. F. & Panzer, U., 10.01.2023, In: JCI INSIGHT. 8, 1, e160251.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  55. Multicytokine-producing CD4+ T cells characterize the livers of patients with NASH

    Woestemeier, A., Scognamiglio, P., Zhao, Y., Wagner, J., Muscate, F., Casar, C., Siracusa, F., Cortesi, F., Agalioti, T., Müller, S., Sagebiel, A., Konczalla, L., Wahib, R., Karstens, K-F., Giannou, A. D., Duprée, A., Wolter, S., Wong, M. N., Mühlig, A. K., Bielecka, A. A., Bansal, V., Zhang, T., Mann, O., Puelles, V. G., Huber, T. B., Lohse, A. W., Izbicki, J. R., Palm, N. W., Bonn, S., Huber, S. & Gagliani, N., 10.01.2023, In: JCI INSIGHT. 8, 1, e153831.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  56. Single-cell transcriptomics reveals a mechanosensitive injury signaling pathway in early diabetic nephropathy

    Liu, S., Zhao, Y., Lu, S., Zhang, T., Lindenmeyer, M. T., Nair, V., Gies, S. E., Wu, G., Nelson, R. G., Czogalla, J., Aypek, H., Zielinski, S., Liao, Z., Schaper, M., Fermin, D., Cohen, C. D., Delic, D., Krebs, C. F., Grahammer, F., Wiech, T., Kretzler, M., Meyer-Schwesinger, C., Bonn, S. & Huber, T. B., 10.01.2023, In: GENOME MED. 15, 1, p. 2

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  57. Pathogen detection in RNA-seq data with Pathonoia

    Liebhoff, A-M., Menden, K., Laschtowitz, A., Franke, A., Schramm, C. & Bonn, S., 17.02.2023, In: BMC BIOINFORMATICS. 24, 1, 53.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

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