Institute of Medical Systems Bioinformatics
Publications
- 2020
CRISPLD1: a novel conserved target in the transition to human heart failure
Khadjeh, S., Hindmarsh, V., Weber, F., Cyganek, L., Vidal, R. O., Torkieh, S., Streckfuss-Bömeke, K., Lbik, D., Tiburcy, M., Mohamed, B. A., Bonn, S., Toischer, K. & Hasenfuss, G., 07.03.2020, In: BASIC RES CARDIOL. 115, 3, p. 27Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Explainable Deep Learning for Augmentation of Small RNA Expression Profiles
Fiosina, J., Fiosins, M. & Bonn, S., 01.02.2020, In: J COMPUT BIOL.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks
Marouf, M., Machart, P., Bansal, V., Kilian, C., Magruder, D. S., Krebs, C. F. & Bonn, S., 09.01.2020, In: NAT COMMUN. 11, 1, p. 166Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
SEAweb: the small RNA Expression Atlas web application
Rahman, R-U., Liebhoff, A-M., Bansal, V., Fiosins, M., Rajput, A., Sattar, A., Magruder, D. S., Madan, S., Sun, T., Gautam, A., Heins, S., Liwinski, T., Bethune, J., Trenkwalder, C., Fluck, J., Mollenhauer, B. & Bonn, S., 08.01.2020, In: NUCLEIC ACIDS RES. 48, D1, p. D204-D219Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1)
Samir, M., Vidal, R. O., Abdallah, F., Capece, V., Seehusen, F., Geffers, R., Hussein, A., Ali, A. A. H., Bonn, S. & Pessler, F., 01.2020, In: RNA BIOL. 17, 1, p. 112-124 13 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
- 2019
The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43
Keihani, S., Kluever, V., Mandad, S., Bansal, V., Rahman, R., Fritsch, E., Gomes, L. C., Gärtner, A., Kügler, S., Urlaub, H., Wren, J. D., Bonn, S., Rizzoli, S. O. & Fornasiero, E. F., 18.12.2019, In: SCI ADV. 5, 12, p. eaay2670Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Violent aggression predicted by multiple pre-adult environmental hits
Mitjans, M., Seidel, J., Begemann, M., Bockhop, F., Moya-Higueras, J., Bansal, V., Wesolowski, J., Seelbach, A., Ibáñez, M. I., Kovacevic, F., Duvar, O., Fañanás, L., Wolf, H-U., Ortet, G., Zwanzger, P., Klein, V., Lange, I., Tänzer, A., Dudeck, M., Penke, L., van Elst, L. T., Bittner, R. A., Schmidmeier, R., Freese, R., Müller-Isberner, R., Wiltfang, J., Bliesener, T., Bonn, S., Poustka, L., Müller, J. L., Arias, B. & Ehrenreich, H., 10.2019, In: MOL PSYCHIATR. 24, 10, p. 1549-1564 16 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice
Kaczmarczyk, L., Bansal, V., Rajput, A., Rahman, R-U., Krzyżak, W., Degen, J., Poll, S., Fuhrmann, M., Bonn, S. & Jackson, W. S., 08.2019, In: PLOS BIOL. 17, 8, p. e3000374Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
DNA Methyltransferase 1 Controls Nephron Progenitor Cell Renewal and Differentiation
Wanner, N., Vornweg, J., Combes, A., Wilson, S., Plappert, J., Rafflenbeul, G., Puelles, V. G., Rahman, R-U., Liwinski, T., Lindner, S., Grahammer, F., Kretz, O., Wlodek, M. E., Romano, T., Moritz, K. M., Boerries, M., Busch, H., Bonn, S., Little, M. H., Bechtel-Walz, W. & Huber, T. B., 01.2019, In: J AM SOC NEPHROL. 30, 1, p. 63-78 16 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
- 2018
The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain
Mandad, S., Rahman, R-U., Centeno, T. P., Vidal, R. O., Wildhagen, H., Rammner, B., Keihani, S., Opazo, F., Urban, I., Ischebeck, T., Kirli, K., Benito, E., Fischer, A., Yousefi, R. Y., Dennerlein, S., Rehling, P., Feussner, I., Urlaub, H., Bonn, S., Rizzoli, S. O. & Fornasiero, E. F., 15.11.2018, In: SCI REP-UK. 8, 1, p. 16913Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions
Fornasiero, E. F., Mandad, S., Wildhagen, H., Alevra, M., Rammner, B., Keihani, S., Opazo, F., Urban, I., Ischebeck, T., Sakib, M. S., Fard, M. K., Kirli, K., Centeno, T. P., Vidal, R. O., Rahman, R-U., Benito, E., Fischer, A., Dennerlein, S., Rehling, P., Feussner, I., Bonn, S., Simons, M., Urlaub, H. & Rizzoli, S. O., 12.10.2018, In: NAT COMMUN. 9, 1, p. 4230Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Genome-wide association study results for educational attainment aid in identifying genetic heterogeneity of schizophrenia
Bansal, V., Mitjans, M., Burik, C. A. P., Linnér, R. K., Okbay, A., Rietveld, C. A., Begemann, M., Bonn, S., Ripke, S., de Vlaming, R., Nivard, M. G., Ehrenreich, H. & Koellinger, P. D., 06.08.2018, In: NAT COMMUN. 9, 1, p. 3078Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Targeting myelin lipid metabolism as a potential therapeutic strategy in a model of CMT1A neuropathy
Fledrich, R., Abdelaal, T., Rasch, L., Bansal, V., Schütza, V., Brügger, B., Lüchtenborg, C., Prukop, T., Stenzel, J., Rahman, R. U., Hermes, D., Ewers, D., Möbius, W., Ruhwedel, T., Katona, I., Weis, J., Klein, D., Martini, R., Brück, W., Müller, W. C., Bonn, S., Bechmann, I., Nave, K. A., Stassart, R. M. & Sereda, M. W., 02.08.2018, In: NAT COMMUN. 9, 1, p. 3025Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Molecular Evolution and Functional Divergence of the IgLON Family
Kubick, N., Brösamle, D. & Mickael, M-E., 21.05.2018, In: EVOL BIOINFORM. 14, p. 1176934318775081Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Epigenetic alterations in longevity regulators, reduced life span, and exacerbated aging-related pathology in old father offspring mice
Xie, K., Ryan, D. P., Pearson, B. L., Henzel, K. S., Neff, F., Vidal, R. O., Hennion, M., Lehmann, I., Schleif, M., Schröder, S., Adler, T., Rathkolb, B., Rozman, J., Schütz, A-L., Prehn, C., Mickael, M. E., Weiergräber, M., Adamski, J., Busch, D. H., Ehninger, G., Matynia, A., Jackson, W. S., Wolf, E., Fuchs, H., Gailus-Durner, V., Bonn, S., Hrabě de Angelis, M. & Ehninger, D., 06.03.2018, In: P NATL ACAD SCI USA. 115, 10, p. E2348-E2357Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Oasis 2: improved online analysis of small RNA-seq data
Rahman, R-U., Gautam, A., Bethune, J., Sattar, A., Fiosins, M., Magruder, D. S., Capece, V., Shomroni, O. & Bonn, S., 14.02.2018, In: BMC BIOINFORMATICS. 19, 1, p. 54Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Regional and subtype-dependent miRNA signatures in sporadic Creutzfeldt-Jakob disease are accompanied by alterations in miRNA silencing machinery and biogenesis
Llorens, F., Thüne, K., Martí, E., Kanata, E., Dafou, D., Díaz-Lucena, D., Vivancos, A., Shomroni, O., Zafar, S., Schmitz, M., Michel, U., Fernández-Borges, N., Andréoletti, O., Del Río, J. A., Díez, J., Fischer, A., Bonn, S., Sklaviadis, T., Torres, J. M., Ferrer, I. & Zerr, I., 22.01.2018, In: PLOS PATHOG. 14, 1, p. e1006802Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Upregulation of miR-370 and miR-543 is associated with reduced expression of heat shock protein 40 in spinocerebellar ataxia type 3
Evert, B. O., Nalavade, R., Jungverdorben, J., Matthes, F., Weber, S., Rajput, A., Bonn, S., Brüstle, O., Peitz, M. & Krauß, S., 2018, In: PLOS ONE. 13, 8, p. e0201794Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
- 2017
The landscape of human mutually exclusive splicing
Hatje, K., Rahman, R-U., Vidal, R. O., Simm, D., Hammesfahr, B., Bansal, V., Rajput, A., Mickael, M. E., Sun, T., Bonn, S. & Kollmar, M., 14.12.2017, In: MOL SYST BIOL. 13, 12, 959.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review
Severe DCM phenotype of patient harboring RBM20 mutation S635A can be modeled by patient-specific induced pluripotent stem cell-derived cardiomyocytes
Streckfuss-Bömeke, K., Tiburcy, M., Fomin, A., Luo, X., Li, W., Fischer, C., Özcelik, C., Perrot, A., Sossalla, S., Haas, J., Vidal, R. O., Rebs, S., Khadjeh, S., Meder, B., Bonn, S., Linke, W. A., Zimmermann, W-H., Hasenfuss, G. & Guan, K., 12.2017, In: J MOL CELL CARDIOL. 113, p. 9-21 13 p.Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review