Identifying gross post-mortem organ images using a pre-trained convolutional neural network

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Identifying gross post-mortem organ images using a pre-trained convolutional neural network. / Garland, Jack; Hu, Mindy; Kesha, Kilak; Glenn, Charley; Morrow, Paul; Stables, Simon; Ondruschka, Benjamin; Tse, Rexson.

In: J FORENSIC SCI, Vol. 66, No. 2, 03.2021, p. 630-635.

Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

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Garland, J, Hu, M, Kesha, K, Glenn, C, Morrow, P, Stables, S, Ondruschka, B & Tse, R 2021, 'Identifying gross post-mortem organ images using a pre-trained convolutional neural network', J FORENSIC SCI, vol. 66, no. 2, pp. 630-635. https://doi.org/10.1111/1556-4029.14608

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Bibtex

@article{6c5539225e7a45cc8727c5fa29ae1291,
title = "Identifying gross post-mortem organ images using a pre-trained convolutional neural network",
abstract = "Identifying organs/tissue and pathology on radiological and microscopic images can be performed using convolutional neural networks (CNN). However, there are scant studies on applying CNN to post-mortem gross images of visceral organs. This proof-of-concept study used 537 gross post-mortem images of dissected brain, heart, lung, liver, spleen, and kidney, which were randomly divided into a training and teaching datasets for the pre-trained CNN Xception. The CNN was trained using the training dataset and subsequently tested on the testing dataset. The overall accuracies were >95% percent for both training and testing datasets and have an F1 score of >0.95 for all dissected organs. This study showed that small datasets of post-mortem images can be classified with a very high accuracy using a pre-trained CNN. This novel area has the potential for future application in data mining, education and teaching, case review, research, quality assurance, auditing purposes, and identifying pathology.",
author = "Jack Garland and Mindy Hu and Kilak Kesha and Charley Glenn and Paul Morrow and Simon Stables and Benjamin Ondruschka and Rexson Tse",
note = "{\textcopyright} 2020 American Academy of Forensic Sciences.",
year = "2021",
month = mar,
doi = "10.1111/1556-4029.14608",
language = "English",
volume = "66",
pages = "630--635",
journal = "J FORENSIC SCI",
issn = "0022-1198",
publisher = "Wiley-Blackwell",
number = "2",

}

RIS

TY - JOUR

T1 - Identifying gross post-mortem organ images using a pre-trained convolutional neural network

AU - Garland, Jack

AU - Hu, Mindy

AU - Kesha, Kilak

AU - Glenn, Charley

AU - Morrow, Paul

AU - Stables, Simon

AU - Ondruschka, Benjamin

AU - Tse, Rexson

N1 - © 2020 American Academy of Forensic Sciences.

PY - 2021/3

Y1 - 2021/3

N2 - Identifying organs/tissue and pathology on radiological and microscopic images can be performed using convolutional neural networks (CNN). However, there are scant studies on applying CNN to post-mortem gross images of visceral organs. This proof-of-concept study used 537 gross post-mortem images of dissected brain, heart, lung, liver, spleen, and kidney, which were randomly divided into a training and teaching datasets for the pre-trained CNN Xception. The CNN was trained using the training dataset and subsequently tested on the testing dataset. The overall accuracies were >95% percent for both training and testing datasets and have an F1 score of >0.95 for all dissected organs. This study showed that small datasets of post-mortem images can be classified with a very high accuracy using a pre-trained CNN. This novel area has the potential for future application in data mining, education and teaching, case review, research, quality assurance, auditing purposes, and identifying pathology.

AB - Identifying organs/tissue and pathology on radiological and microscopic images can be performed using convolutional neural networks (CNN). However, there are scant studies on applying CNN to post-mortem gross images of visceral organs. This proof-of-concept study used 537 gross post-mortem images of dissected brain, heart, lung, liver, spleen, and kidney, which were randomly divided into a training and teaching datasets for the pre-trained CNN Xception. The CNN was trained using the training dataset and subsequently tested on the testing dataset. The overall accuracies were >95% percent for both training and testing datasets and have an F1 score of >0.95 for all dissected organs. This study showed that small datasets of post-mortem images can be classified with a very high accuracy using a pre-trained CNN. This novel area has the potential for future application in data mining, education and teaching, case review, research, quality assurance, auditing purposes, and identifying pathology.

U2 - 10.1111/1556-4029.14608

DO - 10.1111/1556-4029.14608

M3 - SCORING: Journal article

C2 - 33105027

VL - 66

SP - 630

EP - 635

JO - J FORENSIC SCI

JF - J FORENSIC SCI

SN - 0022-1198

IS - 2

ER -