GTP-specific fab fragment-based GTPase activity assay

  • Kari Kopra
  • Anita Rozwandowicz-Jansen
  • Markku Syrjänpää
  • Olga Blaževitš
  • Alessio Ligabue
  • Stefan Veltel
  • Urpo Lamminmäki
  • Daniel Abankwa
  • Harri Härmä

Abstract

GTPases are central cellular signaling proteins, which cycle between a GDP-bound inactive and a GTP-bound active conformation in a controlled manner. Ras GTPases are frequently mutated in cancer and so far only few experimental inhibitors exist. The most common methods for monitoring GTP hydrolysis rely on luminescent GDP- or GTP-analogs. In this study, the first GTP-specific Fab fragment and its application are described. We selected Fab fragments using the phage display technology. Six Fab fragments were found against 2'/3'-GTP-biotin and 8-GTP-biotin. Selected antibody fragments allowed specific detection of endogenous, free GTP. The most potent Fab fragment (2A4(GTP)) showed over 100-fold GTP-specificity over GDP, ATP, or CTP and was used to develop a heterogeneous time-resolved luminescence based assay for the monitoring of GTP concentration. The method allows studying the GEF dependent H-Ras activation (GTP binding) and GAP-catalyzed H-Ras deactivation (GTP hydrolysis) at nanomolar protein concentrations.

Bibliographical data

Original languageEnglish
ISSN0003-2700
DOIs
Publication statusPublished - 17.03.2015
PubMed 25707436