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Brain simulation as a cloud service: The Virtual Brain on EBRAINS

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Brain simulation as a cloud service: The Virtual Brain on EBRAINS. / Schirner, Michael; Domide, Lia; Perdikis, Dionysios; Triebkorn, Paul; Stefanovski, Leon; Pai, Roopa; Prodan, Paula; Valean, Bogdan; Palmer, Jessica; Langford, Chloê; Blickensdörfer, André; van der Vlag, Michiel; Diaz-Pier, Sandra; Peyser, Alexander; Klijn, Wouter; Pleiter, Dirk; Nahm, Anne; Schmid, Oliver; Woodman, Marmaduke; Zehl, Lyuba; Fousek, Jan; Petkoski, Spase; Kusch, Lionel; Hashemi, Meysam; Marinazzo, Daniele; Mangin, Jean-François; Flöel, Agnes; Akintoye, Simisola; Stahl, Bernd Carsten; Cepic, Michael; Johnson, Emily; Deco, Gustavo; McIntosh, Anthony R; Hilgetag, Claus C; Morgan, Marc; Schuller, Bernd; Upton, Alex; McMurtrie, Colin; Dickscheid, Timo; Bjaalie, Jan G; Amunts, Katrin; Mersmann, Jochen; Jirsa, Viktor; Ritter, Petra.

In: NEUROIMAGE, Vol. 251, 118973, 01.05.2022.

Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

Harvard

Schirner, M, Domide, L, Perdikis, D, Triebkorn, P, Stefanovski, L, Pai, R, Prodan, P, Valean, B, Palmer, J, Langford, C, Blickensdörfer, A, van der Vlag, M, Diaz-Pier, S, Peyser, A, Klijn, W, Pleiter, D, Nahm, A, Schmid, O, Woodman, M, Zehl, L, Fousek, J, Petkoski, S, Kusch, L, Hashemi, M, Marinazzo, D, Mangin, J-F, Flöel, A, Akintoye, S, Stahl, BC, Cepic, M, Johnson, E, Deco, G, McIntosh, AR, Hilgetag, CC, Morgan, M, Schuller, B, Upton, A, McMurtrie, C, Dickscheid, T, Bjaalie, JG, Amunts, K, Mersmann, J, Jirsa, V & Ritter, P 2022, 'Brain simulation as a cloud service: The Virtual Brain on EBRAINS', NEUROIMAGE, vol. 251, 118973. https://doi.org/10.1016/j.neuroimage.2022.118973

APA

Schirner, M., Domide, L., Perdikis, D., Triebkorn, P., Stefanovski, L., Pai, R., Prodan, P., Valean, B., Palmer, J., Langford, C., Blickensdörfer, A., van der Vlag, M., Diaz-Pier, S., Peyser, A., Klijn, W., Pleiter, D., Nahm, A., Schmid, O., Woodman, M., ... Ritter, P. (2022). Brain simulation as a cloud service: The Virtual Brain on EBRAINS. NEUROIMAGE, 251, [118973]. https://doi.org/10.1016/j.neuroimage.2022.118973

Vancouver

Schirner M, Domide L, Perdikis D, Triebkorn P, Stefanovski L, Pai R et al. Brain simulation as a cloud service: The Virtual Brain on EBRAINS. NEUROIMAGE. 2022 May 1;251. 118973. https://doi.org/10.1016/j.neuroimage.2022.118973

Bibtex

@article{8c0515ba92b540c29b58c2a4a523f54d,
title = "Brain simulation as a cloud service: The Virtual Brain on EBRAINS",
abstract = "The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS (ebrains.eu). It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.",
author = "Michael Schirner and Lia Domide and Dionysios Perdikis and Paul Triebkorn and Leon Stefanovski and Roopa Pai and Paula Prodan and Bogdan Valean and Jessica Palmer and Chlo{\^e} Langford and Andr{\'e} Blickensd{\"o}rfer and {van der Vlag}, Michiel and Sandra Diaz-Pier and Alexander Peyser and Wouter Klijn and Dirk Pleiter and Anne Nahm and Oliver Schmid and Marmaduke Woodman and Lyuba Zehl and Jan Fousek and Spase Petkoski and Lionel Kusch and Meysam Hashemi and Daniele Marinazzo and Jean-Fran{\c c}ois Mangin and Agnes Fl{\"o}el and Simisola Akintoye and Stahl, {Bernd Carsten} and Michael Cepic and Emily Johnson and Gustavo Deco and McIntosh, {Anthony R} and Hilgetag, {Claus C} and Marc Morgan and Bernd Schuller and Alex Upton and Colin McMurtrie and Timo Dickscheid and Bjaalie, {Jan G} and Katrin Amunts and Jochen Mersmann and Viktor Jirsa and Petra Ritter",
note = "Copyright {\textcopyright} 2022. Published by Elsevier Inc.",
year = "2022",
month = may,
day = "1",
doi = "10.1016/j.neuroimage.2022.118973",
language = "English",
volume = "251",
journal = "NEUROIMAGE",
issn = "1053-8119",
publisher = "Academic Press",

}

RIS

TY - JOUR

T1 - Brain simulation as a cloud service: The Virtual Brain on EBRAINS

AU - Schirner, Michael

AU - Domide, Lia

AU - Perdikis, Dionysios

AU - Triebkorn, Paul

AU - Stefanovski, Leon

AU - Pai, Roopa

AU - Prodan, Paula

AU - Valean, Bogdan

AU - Palmer, Jessica

AU - Langford, Chloê

AU - Blickensdörfer, André

AU - van der Vlag, Michiel

AU - Diaz-Pier, Sandra

AU - Peyser, Alexander

AU - Klijn, Wouter

AU - Pleiter, Dirk

AU - Nahm, Anne

AU - Schmid, Oliver

AU - Woodman, Marmaduke

AU - Zehl, Lyuba

AU - Fousek, Jan

AU - Petkoski, Spase

AU - Kusch, Lionel

AU - Hashemi, Meysam

AU - Marinazzo, Daniele

AU - Mangin, Jean-François

AU - Flöel, Agnes

AU - Akintoye, Simisola

AU - Stahl, Bernd Carsten

AU - Cepic, Michael

AU - Johnson, Emily

AU - Deco, Gustavo

AU - McIntosh, Anthony R

AU - Hilgetag, Claus C

AU - Morgan, Marc

AU - Schuller, Bernd

AU - Upton, Alex

AU - McMurtrie, Colin

AU - Dickscheid, Timo

AU - Bjaalie, Jan G

AU - Amunts, Katrin

AU - Mersmann, Jochen

AU - Jirsa, Viktor

AU - Ritter, Petra

N1 - Copyright © 2022. Published by Elsevier Inc.

PY - 2022/5/1

Y1 - 2022/5/1

N2 - The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS (ebrains.eu). It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.

AB - The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS (ebrains.eu). It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.

U2 - 10.1016/j.neuroimage.2022.118973

DO - 10.1016/j.neuroimage.2022.118973

M3 - SCORING: Journal article

C2 - 35131433

VL - 251

JO - NEUROIMAGE

JF - NEUROIMAGE

SN - 1053-8119

M1 - 118973

ER -