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ASTD: The Alternative Splicing and Transcript Diversity database.

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ASTD: The Alternative Splicing and Transcript Diversity database. / Koscielny, Gautier; Vincent, Le Texier; Gopalakrishnan, Chellappa; Kumanduri, Vasudev; Riethoven, Jean-Jack; Nardone, Francesco; Stanley, Eleanor; Fallsehr, Christine; Hofmann, Oliver; Kull, Meelis; Harrington, Eoghan; Boué, Stéphanie; Eyras, Eduardo; Plass, Mireya; Lopez, Fabrice; Ritchie, William; Moucadel, Virginie; Ara, Takeshi; Pospisil, Heike; Herrmann, Alexander; Jens, G Reich; Guigó, Roderic; Bork, Peer; Doeberitz, Magnus von Knebel; Vilo, Jaak; Hide, Winston; Apweiler, Rolf; Thanaraj, Thangavel Alphonse; Gautheret, Daniel.

In: GENOMICS, Vol. 93, No. 3, 3, 2009, p. 213-220.

Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

Harvard

Koscielny, G, Vincent, LT, Gopalakrishnan, C, Kumanduri, V, Riethoven, J-J, Nardone, F, Stanley, E, Fallsehr, C, Hofmann, O, Kull, M, Harrington, E, Boué, S, Eyras, E, Plass, M, Lopez, F, Ritchie, W, Moucadel, V, Ara, T, Pospisil, H, Herrmann, A, Jens, GR, Guigó, R, Bork, P, Doeberitz, MVK, Vilo, J, Hide, W, Apweiler, R, Thanaraj, TA & Gautheret, D 2009, 'ASTD: The Alternative Splicing and Transcript Diversity database.', GENOMICS, vol. 93, no. 3, 3, pp. 213-220. <http://www.ncbi.nlm.nih.gov/pubmed/19059335?dopt=Citation>

APA

Koscielny, G., Vincent, L. T., Gopalakrishnan, C., Kumanduri, V., Riethoven, J-J., Nardone, F., Stanley, E., Fallsehr, C., Hofmann, O., Kull, M., Harrington, E., Boué, S., Eyras, E., Plass, M., Lopez, F., Ritchie, W., Moucadel, V., Ara, T., Pospisil, H., ... Gautheret, D. (2009). ASTD: The Alternative Splicing and Transcript Diversity database. GENOMICS, 93(3), 213-220. [3]. http://www.ncbi.nlm.nih.gov/pubmed/19059335?dopt=Citation

Vancouver

Koscielny G, Vincent LT, Gopalakrishnan C, Kumanduri V, Riethoven J-J, Nardone F et al. ASTD: The Alternative Splicing and Transcript Diversity database. GENOMICS. 2009;93(3):213-220. 3.

Bibtex

@article{dec232d496584886ae63b5ae3d8a661b,
title = "ASTD: The Alternative Splicing and Transcript Diversity database.",
abstract = "The Alternative Splicing and Transcript Diversity database (ASTD) gives access to a vast collection of alternative transcripts that integrate transcription initiation, polyadenylation and splicing variant data. Alternative transcripts are derived from the mapping of transcribed sequences to the complete human, mouse and rat genomes using an extension of the computational pipeline developed for the ASD (Alternative Splicing Database) and ATD (Alternative Transcript Diversity) databases, which are now superseded by ASTD. For the human genome, ASTD identifies splicing variants, transcription initiation variants and polyadenylation variants in 68%, 68% and 62% of the gene set, respectively, consistent with current estimates for transcription variation. Users can access ASTD through a variety of browsing and query tools, including expression state-based queries for the identification of tissue-specific isoforms. Participating laboratories have experimentally validated a subset of ASTD-predicted alternative splice forms and alternative polyadenylation forms that were not previously reported. The ASTD database can be accessed at http://www.ebi.ac.uk/astd.",
author = "Gautier Koscielny and Vincent, {Le Texier} and Chellappa Gopalakrishnan and Vasudev Kumanduri and Jean-Jack Riethoven and Francesco Nardone and Eleanor Stanley and Christine Fallsehr and Oliver Hofmann and Meelis Kull and Eoghan Harrington and St{\'e}phanie Bou{\'e} and Eduardo Eyras and Mireya Plass and Fabrice Lopez and William Ritchie and Virginie Moucadel and Takeshi Ara and Heike Pospisil and Alexander Herrmann and Jens, {G Reich} and Roderic Guig{\'o} and Peer Bork and Doeberitz, {Magnus von Knebel} and Jaak Vilo and Winston Hide and Rolf Apweiler and Thanaraj, {Thangavel Alphonse} and Daniel Gautheret",
year = "2009",
language = "Deutsch",
volume = "93",
pages = "213--220",
number = "3",

}

RIS

TY - JOUR

T1 - ASTD: The Alternative Splicing and Transcript Diversity database.

AU - Koscielny, Gautier

AU - Vincent, Le Texier

AU - Gopalakrishnan, Chellappa

AU - Kumanduri, Vasudev

AU - Riethoven, Jean-Jack

AU - Nardone, Francesco

AU - Stanley, Eleanor

AU - Fallsehr, Christine

AU - Hofmann, Oliver

AU - Kull, Meelis

AU - Harrington, Eoghan

AU - Boué, Stéphanie

AU - Eyras, Eduardo

AU - Plass, Mireya

AU - Lopez, Fabrice

AU - Ritchie, William

AU - Moucadel, Virginie

AU - Ara, Takeshi

AU - Pospisil, Heike

AU - Herrmann, Alexander

AU - Jens, G Reich

AU - Guigó, Roderic

AU - Bork, Peer

AU - Doeberitz, Magnus von Knebel

AU - Vilo, Jaak

AU - Hide, Winston

AU - Apweiler, Rolf

AU - Thanaraj, Thangavel Alphonse

AU - Gautheret, Daniel

PY - 2009

Y1 - 2009

N2 - The Alternative Splicing and Transcript Diversity database (ASTD) gives access to a vast collection of alternative transcripts that integrate transcription initiation, polyadenylation and splicing variant data. Alternative transcripts are derived from the mapping of transcribed sequences to the complete human, mouse and rat genomes using an extension of the computational pipeline developed for the ASD (Alternative Splicing Database) and ATD (Alternative Transcript Diversity) databases, which are now superseded by ASTD. For the human genome, ASTD identifies splicing variants, transcription initiation variants and polyadenylation variants in 68%, 68% and 62% of the gene set, respectively, consistent with current estimates for transcription variation. Users can access ASTD through a variety of browsing and query tools, including expression state-based queries for the identification of tissue-specific isoforms. Participating laboratories have experimentally validated a subset of ASTD-predicted alternative splice forms and alternative polyadenylation forms that were not previously reported. The ASTD database can be accessed at http://www.ebi.ac.uk/astd.

AB - The Alternative Splicing and Transcript Diversity database (ASTD) gives access to a vast collection of alternative transcripts that integrate transcription initiation, polyadenylation and splicing variant data. Alternative transcripts are derived from the mapping of transcribed sequences to the complete human, mouse and rat genomes using an extension of the computational pipeline developed for the ASD (Alternative Splicing Database) and ATD (Alternative Transcript Diversity) databases, which are now superseded by ASTD. For the human genome, ASTD identifies splicing variants, transcription initiation variants and polyadenylation variants in 68%, 68% and 62% of the gene set, respectively, consistent with current estimates for transcription variation. Users can access ASTD through a variety of browsing and query tools, including expression state-based queries for the identification of tissue-specific isoforms. Participating laboratories have experimentally validated a subset of ASTD-predicted alternative splice forms and alternative polyadenylation forms that were not previously reported. The ASTD database can be accessed at http://www.ebi.ac.uk/astd.

M3 - SCORING: Zeitschriftenaufsatz

VL - 93

SP - 213

EP - 220

IS - 3

M1 - 3

ER -