Institute of Computational Neuroscience

Publications

  1. 3D cerebrovascular segmentation combining fuzzy vessel enhancement and level-sets with anisotropic energy weights

    Forkert, N. D., Schmidt-Richberg, A., Fiehler, J., Illies, T., Möller, D., Säring, D., Handels, H. & Ehrhardt, J., 01.02.2013, In: MAGN RESON IMAGING. 31, 2, p. 262-71 10 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  2. [3-dimensional display of computed tomographic studies of craniofacial anomalies]

    Witte, G., Höltje, W., Tiede, U. & Riemer, M., 1986, In: ROFO-FORTSCHR RONTG. 144, 4, p. 400-405 4.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  3. 3-D segmentation of MR images of the head for 3-D display.

    Bomans, M., Hohne, K. H., Tiede, U. & Riemer, M., 1990, In: IEEE T MED IMAGING. 9, 2, p. 177-183 2.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  4. 3D Segmentation of the Left Ventricle Combining Long- and Short-axis MR Images.

    Säring, D., Relan, J., Groth, M., Müllerleile, K. & Handels, H., 2009, In: METHOD INFORM MED. 48, 4, 4.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  5. 3d-SMRnet: Achieving a New Quality of MPI System Matrix Recovery by Deep Learning

    Baltruschat, I. M., Szwargulski, P. K., Griese, F., Grosser, M., Werner, R. & Knopp, T., 10.2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part II. 1 ed. Springer Nature Switzerland, p. 74-82 9 p. (Lecture Notes in Computer Science (LNCS); no. 12262).

    Research output: SCORING: Contribution to book/anthologySCORING: Contribution to collected editions/anthologiesResearchpeer-review

  6. [3-D visualization of dose distributions in CT image volumes]

    Tabbert, E., Riemer, M., Schiemann, T., Tiede, U. & Höhne, K. H., 1992, In: STRAHLENTHER ONKOL. 168, 1, p. 31-34 1.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  7. 4D blood flow visualization fusing 3D and 4D MRA image sequences.

    Forkert, N., Fiehler, J., Illies, T., Möller, D. P. F., Handels, H. & Säring, D., 2012, In: J MAGN RESON IMAGING. 36, 2, p. 443-453 2.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  8. 4D CT image artifacts affect local control in SBRT of lung and liver metastases

    Sentker, T., Schmidt, V., Ozga, A-K., Petersen, C., Madesta, F., Hofmann, C., Werner, R. & Gauer, T., 07.2020, In: RADIOTHER ONCOL. 148, p. 229-234 6 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  9. 4D dose simulation in volumetric arc therapy: Accuracy and affecting parameters

    Sothmann, T., Gauer, T. & Werner, R., 2017, In: PLOS ONE. 12, 2, p. e0172810 17 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  10. 4D medical image computing and visualization of lung tumor mobility in spatio-temporal CT image data.

    Handels, H., Werner, R., Schmidt, R., Frenzel, T., Lu, W., Low, D. & Ehrhardt, J., 2007, In: INT J MED INFORM. 76, 3, p. 433-439 3.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  11. 4D Motion Modeling: Estimation of Respiratory Motion for Radiation Therapy

    Ehrhardt, J., Schmidt-Richberg, A., Werner, R. & Handels, H., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 2166-2169 4 p.

    Research output: SCORING: Contribution to book/anthologySCORING: Contribution to collected editions/anthologiesResearchpeer-review

  12. A Bayesian Alternative to Mutual Information for the Hierarchical Clustering of Dependent Random Variables

    Marrelec, G., Messé, A. & Bellec, P., 2015, In: PLOS ONE. 10, 9, p. e0137278

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  13. Ability of extracellular volume imaging to serially measure infarct size compared to LGE within six months after acute myocardial infarction

    Sinn, M., Tahir, E., Radunski, U. K., Säring, D., Müllerleile, K., Stehning, C., Adam, G. & Lund, G., 03.02.2015, Journal of Cardiovascular Magnetic Resonance .

    Research output: SCORING: Contribution to book/anthologyConference contribution - Published abstract for conference with selection processResearchpeer-review

  14. A blueprint of mammalian cortical connectomes

    Goulas, A., Majka, P., Rosa, M. G. P. & Hilgetag, C. C., 03.2019, In: PLOS BIOL. 17, 3, p. e2005346

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  15. A closer look at the apparent correlation of structural and functional connectivity in excitable neural networks

    Messé, A., Hütt, M-T., König, P. & Hilgetag, C. C., 19.01.2015, In: SCI REP-UK. 5, p. Art. 7870

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  16. A computerized three-dimensional atlas of the human skull and brain.

    Tiede, U., Bomans, M., Höhne, K. H., Pommert, A., Riemer, M., Schiemann, T., Schubert, R. & Lierse, W., 1993, In: AM J NEURORADIOL. 14, 3, p. 551-551 3.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  17. A Connectomic Hypothesis for the Hominization of the Brain

    Changeux, J-P., Goulas, A. & Hilgetag, C. C., 31.03.2021, In: CEREB CORTEX. 31, 5, p. 2425-2449 25 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  18. Adhesion to laminin-1 and collagen IV induces the formation of Ca2+ microdomains that sensitize mouse T cells for activation

    Weiß, M., Hernandez, L. C., Gil Montoya, D. C., Löhndorf, A., Krüger, A., Kopdag, M., Uebler, L., Landwehr, M., Nawrocki, M., Huber, S., Woelk, L-M., Werner, R., Failla, A. V., Flügel, A., Dupont, G., Guse, A. H. & Diercks, B-P., 20.06.2023, In: SCIENCE SIGNALING. 16, 790, p. eabn9405

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  19. Advances in medical image computing.

    Handels, H., Horsch, A. & Meinzer, H-P., 2007, In: METHOD INFORM MED. 46, 3, p. 251-253 3.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  20. Advances in medical image computing.

    Tolxdorff, T., Deserno, T. M., Handels, H. & Meinzer, H-P., 2009, In: METHOD INFORM MED. 48, 4, p. 311-313 4.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  21. A dynamical pattern recognition model of gamma activity in auditory cortex.

    Zavaglia, M., Canolty, R. T., Schofield, T. M., Leff, A. P., Ursino, M., Knight, R. T. & Penny, W. D., 2012, In: NEURAL NETWORKS. 28, p. 1-14

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  22. A Flexible Variational Registration Framework

    Schmidt-Richberg, A., Werner, R., Handels, H. & Ehrhardt, J., 09.05.2014, In: Insight Journal. 12 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearch

  23. A framework for representation and visualization of 3D shape variability of organs in an interactive anatomical atlas.

    Handels, H. & Hacker, S., 2009, In: METHOD INFORM MED. 48, 3, p. 272-281 3.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  24. A Framework for Visuo-Haptic Simulation of Puncture Interventions

    Färber, M., Dalek, D., Habermann, C., Hummel, F., Schöps, C. & Handels, H., 2009, Proceedings 154 - Informatik 2009 Im Focus Leben: Jahrestagung Lübeck. Köllen Verlag Bonn, p. 1309-1316 8 p.

    Research output: SCORING: Contribution to book/anthologySCORING: Contribution to collected editions/anthologiesResearchpeer-review

  25. Aligning 3D time-of-flight MRA datasets for quantitative longitudinal studies: evaluation of rigid registration techniques

    Verleger, T., Schönfeld, M., Säring, D., Siemonsen, S., Fiehler, J. & Forkert, N. D., 2014, In: MAGN RESON IMAGING. 32, 10, p. 1390-5 6 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  26. Altered topology of large-scale structural brain networks in chronic stroke

    Cheng, B., Schlemm, E., Schulz, R., Bönstrup, M., Messe, A., Hilgetag, C-C., Gerloff, C. & Thomalla, G., 04.10.2019, In: BRAIN COMMUN. 2019, 1, p. 1-13

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  27. Altered topology of structural brain networks in patients with Gilles de la Tourette syndrome

    Schlemm, E., Cheng, B., Fischer, F., Hilgetag, C., Gerloff, C. & Thomalla, G., 06.09.2017, In: SCI REP-UK. 7, 1, p. 10606

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  28. A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics

    Schetelig, D., Wolf, I., Diercks, B-P., Fliegert, R., Guse, A., Schlaefer, A. & Werner, R., 2015, Bildverarbeitung für die Medizin 2015. Handels, H., Deserno, T. M., Meinzer, H-P. & Tolxdorff, T. (eds.). 1 ed. Berlin Heidelberg: Springer, p. 401-406 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthologySCORING: Contribution to collected editions/anthologiesResearchpeer-review

  29. Analyse und dynamische 3D-Visualisierung des Blutflusses von zerebralen Gefäßstrukturen unter Verwendung von 3D- und 4D-Magnetresonanzangiographie-Bildfolgen

    Forkert, N., 2009, Informatiktage 2009 Lecture Notes in Informatics (LNI) - Seminars. Köllen Verlag Bonn, p. 223-226 4 p.

    Research output: SCORING: Contribution to book/anthologySCORING: Contribution to collected editions/anthologiesResearchpeer-review

  30. Analysis and dynamic 3D visualization of cerebral blood flow combining 3D and 4D MR image sequences (Proceedings Paper)

    Forkert, N., Säring, D., Fiehler, J., Illies, T., Dietmar, M. & Handels, H., 2009, Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling (Proceedings Volume). SPIE, p. 331-338 8 p.

    Research output: SCORING: Contribution to book/anthologySCORING: Contribution to collected editions/anthologiesResearchpeer-review

  31. Analysis of Dose Shifts induced by Organ Movements during Treatment with TomoTherapy using a Motion Phantom and GafChromic EBT Films

    Grohmann, C., Werner, R., Dirk, A. & Cremers, F., 2009, World Congress on Medical Physics and Biomedical Engineering September 7 - 12, 2009 Munich, Germany (Ifmbe Proceedings). Springer-Verlag GmbH, p. 1020-1023 4 p.

    Research output: SCORING: Contribution to book/anthologySCORING: Contribution to collected editions/anthologiesResearchpeer-review

  32. Analysis of the influence of 4D MR angiography temporal resolution on time-to-peak estimation error for different cerebral vessel structures.

    Forkert, N., Illies, T., Möller, D., Handels, H., Säring, D. & Fiehler, J., 2012, In: AM J NEURORADIOL. 33, 11, p. 2103-2109 11.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  33. Analysis of the influence of imaging-related uncertainties on cerebral aneurysm deformation quantification using a no-deformation physical flow phantom

    Schetelig, D., Sedlacik, J., Fiehler, J., Frölich, A., Knopp, T., Sothmann, T., Waschkewitz, J. & Werner, R., 20.07.2018, In: SCI REP-UK. 8, 1, p. 11004 9 p., 11004.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  34. An anatomical atlas to support the virtual planning of hip operations.

    Ehrhardt, J., Handels, H., Wegner, T., Strathmann, B., Plötz, W. & Pöppl, S. J., 2000, In: Stud Health Technol Inform. 77, p. 1226-1230

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  35. An architectonic type principle integrates macroscopic cortico-cortical connections with intrinsic cortical circuits of the primate brain

    Hilgetag, C. C., Beul, S. F., van Albada, S. J. & Goulas, A., 2019, In: NETW NEUROSCI. 3, 4, p. 905-923 19 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  36. An architectonic type principle in the development of laminar patterns of cortico-cortical connections

    Beul, S. F., Goulas, A. & Hilgetag, C. C., 05.2021, In: BRAIN STRUCT FUNCT. 226, 4, p. 979-987 9 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  37. Anatomical connectivity defines the organization of clusters of cortical areas in the macaque monkey and the cat

    Hilgetag, C. C., Burns, G. A., O'Neill, M. A., Scannell, J. W. & Young, M. P., 29.01.2000, In: PHILOS T R SOC B. 355, 1393, p. 91-110 20 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  38. A natural cortical axis connecting the outside and inside of the human brain

    Hilgetag, C-C., Goulas, A. & Changeux, J-P., 02.08.2022, In: NETW NEUROSCI. 6, 4, p. 950–959 10 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  39. A neural mass model for the simulation of cortical activity estimated from high resolution EEG during cognitive or motor tasks.

    Zavaglia, M., Astolfi, L., Babiloni, F. & Ursino, M., 2006, In: J NEUROSCI METH. 157, 2, p. 317-329 2.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  40. A neural mass model of interconnected regions simulates rhythm propagation observed via TMS-EEG.

    Cona, F., Zavaglia, M., Massimini, M., Rosanova, M. & Ursino, M., 2011, In: NEUROIMAGE. 57, 3, p. 1045-1058 3.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  41. A neural network model of multisensory representation of peripersonal space: effect of tool use.

    Ursino, M., Zavaglia, M., Magosso, E., Serino, A. & Giuseppe, D. P., 2007, In: Conf Proc IEEE Eng Med Biol Soc. 2007, p. 2735-2739

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  42. A new cerebral vessel benchmark dataset (CAPUT) for validation of image-based aneurysm deformation estimation algorithms

    Schetelig, D., Frölich, A., Knopp, T. & Werner, R., 30.10.2018, In: SCI REP-UK. 8, 1, p. 15999 8 p.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  43. A new method for practicing exploration, dissection, and simulation with a complete computerized three-dimensional model of the brain and skull.

    Schubert, R., Höhne, K. H., Pommert, A., Riemer, M., Schiemann, T., Tiede, U. & Lierse, W., 1994, In: Acta Anat (Basel). 150, 1, p. 69-74 1.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  44. A new method for representing the human anatomy.

    Schubert, R., Bomans, M., Höhne, K. H., Pommert, A., Riemer, M., Schiemann, T., Tiede, U. & Lierse, W., 1993, In: COMPUT MED IMAG GRAP. 17, 4-5, p. 243-249 4-5.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  45. A new representation of knowledge concerning human anatomy and function.

    Höhne, K. H., Pflesser, B., Pommert, A., Riemer, M., Schiemann, T., Schubert, R. & Tiede, U., 1995, In: NAT MED. 1, 6, p. 506-511 6.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  46. An optical flow based method for improved reconstruction of 4D CT data sets acquired during free breathing.

    Ehrhardt, J., Werner, R., Säring, D., Frenzel, T., Lu, W., Low, D. & Handels, H., 2007, In: MED PHYS. 34, 2, p. 711-721 2.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  47. A novel interactive anatomic atlas of the hand.

    Gehrmann, S., Höhne, K. H., Linhart, W., Pflesser, B., Pommert, A., Riemer, M., Tiede, U., Windolf, J., Schumacher, U. & Rueger, J. M., 2006, In: CLIN ANAT. 19, 3, p. 258-266 3.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

  48. A Novel network classifier and its application: Optimal hierarchical orderings of the cat visual system from anatomical data

    Hilgetag, C-C., O'Neill, M. A., Scannell, J. W. & Young, M. P., 1995, Genetic Algorithms in Engineering Systems: Innovations and Applications: IEEE Publication # 414. IEEE, p. 71-75

    Research output: SCORING: Contribution to book/anthologyConference contribution - Article for conferenceResearchpeer-review

  49. AnToNIa: A Software Tool for the Hemodynamic Analysis of Cerebral Vascular Malformations Using 3D and 4D MRA Image Sequences

    Forkert, N., Säring, D., Fiehler, J., Illies, T., Möller, D. & Handels, H., 2009, Proceedings 154 - Informatik 2009 Im Focus Leben (Jahrestagung Lübeck). Köllen Verlag Bonn, p. 1309-1316 8 p.

    Research output: SCORING: Contribution to book/anthologySCORING: Contribution to collected editions/anthologiesResearchpeer-review

  50. [Applicability of digital methods in x-ray diagnosis]

    Witte, G., Höhne, K. H., Böcker, F., Riemer, M. & Bücheler, E., 1985, In: ROFO-FORTSCHR RONTG. 142, 6, p. 600-610 6.

    Research output: SCORING: Contribution to journalSCORING: Journal articleResearchpeer-review

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