Research ExplorerResearch UnitsInstitute of Computational Neuroscience Publications

Institute of Computational Neuroscience

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Publications

  1. Unifying the essential concepts of biological networks: biological insights and philosophical foundations

    Kostić, D., Hilgetag, C. C. & Tittgemeyer, M., 13.04.2020, In: PHILOS T R SOC B. 375, 1796, p. 20190314

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  2. P121 Risikotest zum Typ 2 Diabetes: Evaluation des Prototyps im Rahmen eines betrieblichen Gesundheitstages der Stadtreinigung Hamburg.

    Kraft, A. M., Körner, W., Riemer, M., Zyriax, B-C., Harth, V. & Preisser, A. M., 2018, Dokumentationsband zur 58. Wissenschaftlichen Jahrestagung der DGAUM 2018. Angerer, P. & Muth, T. (eds.). 1 ed. p. 393 1 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  3. Cognitive Decline and Reorganization of Functional Connectivity in Healthy Aging: The Pivotal Role of the Salience Network in the Prediction of Age and Cognitive Performances

    La Corte, V., Sperduti, M., Malherbe, C., Vialatte, F., Lion, S., Gallarda, T., Oppenheim, C. & Piolino, P., 2016, In: FRONT AGING NEUROSCI. 8, p. 204

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  4. ΔFosB accumulation in hippocampal granule cells drives cFos pattern separation during spatial learning

    Lamothe-Molina, P. J., Franzelin, A., Beck, L., Li, D., Auksutat, L., Fieblinger, T., Laprell, L., Alhbeck, J., Gee, C. E., Kneussel, M., Engel, A. K., Hilgetag, C. C., Morellini, F. & Oertner, T. G., 26.10.2022, In: NAT COMMUN. 13, 1, 6376.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  5. Deafferentation in thalamic and pontine areas in severe traumatic brain injury

    Laouchedi, M., Galanaud, D., Delmaire, C., Fernandez-Vidal, S., Messé, A., Mesmoudi, S., Oulebsir Boumghar, F., Pélégrini-Issac, M., Puybasset, L., Benali, H. & Perlbarg, V., 01.07.2015, In: J NEURORADIOLOGY. 42, 4, p. 202-211 10 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  6. Book review: Observed Brain Dynamics

    Lee, HR., Hilgetag, C-C. & Tsao, JW., 2009, In: J NEUROL SCI. 276, p. 204-205

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  7. Mapping the connectome: multi-level analysis of brain connectivity.

    Leergaard, T. B., Hilgetag, C. & Sporns, O., 2012, In: FRONT NEUROINFORM. 6, p. 14

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  8. Discrimination of the hierarchical structure of cortical layers in 2-photon microscopy data by combined unsupervised and supervised machine learning

    Li, D., Zavaglia, M., Wang, G., Xie, H., Hu, Y., Werner, R., Guan, J-S. & Hilgetag, C. C., 15.05.2019, In: SCI REP-UK. 9, 1, p. 7424

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  9. Multimodal Memory Components and Their Long-Term Dynamics Identified in Cortical Layers II/III but Not Layer V

    Li, D., Wang, G., Xie, H., Hu, Y., Guan, J-S. & Hilgetag, C. C., 2019, In: FRONT INTEGR NEUROSC. 13, p. 54

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  10. Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy

    Li, D., Wang, G., Werner, R., Xie, H., Guan, J-S. & Hilgetag, C-C., 2021, In: FRONT NEUROINFORM. 15, p. 674439 674439.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  11. Correction: Cerebral Hemodynamics in Patients with Hemolytic Uremic Syndrome Assessed by Susceptibility Weighted Imaging and Four-Dimensional Non-Contrast MR Angiography

    Löbel, U., Forkert, N. D., Schmitt, C. P., Dohrmann, T., Schroeder, M., Magnus, T., Kluge, S., Weiler-Normann, C., Bi, X., Fiehler, J. & Sedlacik, J., 2017, In: PLOS ONE. 12, 2, p. e0172450

    Research output: SCORING: Contribution to journal › Other (editorial matter etc.) › Research

  12. Restoration of visual orienting into a cortically blind hemifield by reversible deactivation of posterior parietal cortex or the superior colliculus

    Lomber, S. G., Payne, B. R., Hilgetag, C. C. & Rushmore, J., 02.2002, In: EXP BRAIN RES. 142, 4, p. 463-74 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  13. Evaluation of a new semi-automatic strategy for quantitative measurement of infarct size in patients with acute and chronic myocardial infarction using cardiac magnetic resonance imaging

    Lund, G., Säring, D., Müllerleile, K., Cuerlis, J., Barz, D., Bannas, P., Radunski, U., Sydow, K. & Adam, G., 2013, In: J CARDIOVASC MAGN R. 15, Suppl 1, p. P201

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  14. Self-consistent deep learning-based boosting of 4D cone-beam computed tomography reconstruction

    Madesta, F., Gauer, T., Sentker, T. & Werner, R., 15.03.2019, Medical Imaging 2019: Image Processing. 1 ed. SPIE , Vol. 10949. p. 1094902 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  15. Widening the Focus: Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies

    Madesta, F., Schmitz, R., Rösch, T. & Werner, R., 10.2020, MICCAI 2020. 1 ed. Springer Nature Switzerland, Vol. 12264. p. 289-298 10 p. (Lecture Notes in Computer Science (LNCS)).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  16. Self-contained deep learning-based boosting of 4D cone-beam CT reconstruction

    Madesta, F., Sentker, T., Gauer, T. & Werner, R., 11.2020, In: MED PHYS. 47, 11, p. 5619-5631 13 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  17. Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images

    Madesta, F., Sentker, T., Gauer, T. & Werner, R., 05.2024, In: MED PHYS. 51, 5, p. 3437-3454 18 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  18. Visuotactile representation of peripersonal space: a neural network study.

    Magosso, E., Zavaglia, M., Serino, A., Giuseppe, D. P. & Ursino, M., 2010, In: NEURAL COMPUT. 22, 1, p. 190-243 1.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  19. Book review: The Noisy Brain

    Mahajan, G. & Hilgetag, C-C., 2011, In: J NEUROL SCI. 300, p. 204

    Research output: SCORING: Contribution to journal › SCORING: Review article › Research

  20. The challenge of mapping the human connectome based on diffusion tractography

    Maier-Hein, K. H., Neher, P. F., Houde, J-C., Côté, M-A., Garyfallidis, E., Zhong, J., Chamberland, M., Yeh, F-C., Lin, Y-C., Ji, Q., Reddick, W. E., Glass, J. O., Chen, D. Q., Feng, Y., Gao, C., Wu, Y., Ma, J., Renjie, H., Li, Q., Westin, C-F., Deslauriers-Gauthier, S., González, J. O. O., Paquette, M., St-Jean, S., Girard, G., Rheault, F., Sidhu, J., Tax, C. M. W., Guo, F., Mesri, H. Y., Dávid, S., Froeling, M., Heemskerk, A. M., Leemans, A., Boré, A., Pinsard, B., Bedetti, C., Desrosiers, M., Brambati, S., Doyon, J., Sarica, A., Vasta, R., Cerasa, A., Quattrone, A., Yeatman, J., Khan, A. R., Hodges, W., Alexander, S., Romascano, D., Barakovic, M., Auría, A., Esteban, O., Lemkaddem, A., Thiran, J-P., Cetingul, H. E., Odry, B. L., Mailhe, B., Nadar, M. S., Pizzagalli, F., Prasad, G., Villalon-Reina, J. E., Galvis, J., Thompson, P. M., Requejo, F. D. S., Laguna, P. L., Lacerda, L. M., Barrett, R., Dell'Acqua, F., Catani, M., Petit, L., Caruyer, E., Daducci, A., Dyrby, T. B., Holland-Letz, T., Hilgetag, C. C., Stieltjes, B. & Descoteaux, M., 07.11.2017, In: NAT COMMUN. 8, 1, p. 1349

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  21. Neural correlates of visuospatial bias in patients with left hemisphere stroke: a causal functional contribution analysis based on game theory

    Malherbe, C., Umarova, R., Zavaglia, M., Kaller, C., Beume, L., Thomalla, G., Weiller, C. & Hilgetag, C. C., 01.07.2018, In: NEUROPSYCHOLOGIA. 115, p. 142-153 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  22. Combining spatial independent component analysis with regression to identify the subcortical components of resting-state FMRI functional networks

    Malherbe, C., Messé, A., Bardinet, E., Pélégrini-Issac, M., Perlbarg, V., Marrelec, G., Worbe, Y., Yelnik, J., Lehéricy, S. & Benali, H., 01.04.2014, In: BRAIN CONNECT. 4, 3, p. 181-192 12 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  23. Game-theoretical mapping of fundamental brain functions based on lesion deficits in acute stroke

    Malherbe, C., Cheng, B., Königsberg, A., Cho, T-H., Ebinger, M., Endres, M., Fiebach, J. B., Fiehler, J., Galinovic, I., Puig, J., Thijs, V., Lemmens, R., Muir, K. W., Nighoghossian, N., Pedraza, S., Simonsen, C. Z., Wouters, A., Gerloff, C., Hilgetag, C. C. & Thomalla, G., 02.09.2021, In: BRAIN COMMUN. 3, 3, p. fcab204

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  24. Situating the default-mode network along a principal gradient of macroscale cortical organization

    Margulies, D. S., Ghosh, S. S., Goulas, A., Falkiewicz, M., Huntenburg, J. M., Langs, G., Bezgin, G., Eickhoff, S. B., Castellanos, F. X., Petrides, M., Jefferies, E. & Smallwood, J., 01.11.2016, In: P NATL ACAD SCI USA. 113, 44, p. 12574-12579 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  25. Functional Connectivity's Degenerate View of Brain Computation

    Marrelec, G., Messé, A., Giron, A. & Rudrauf, D., 13.10.2016, In: PLOS COMPUT BIOL. 12, 10, p. e1005031

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  26. A Bayesian Alternative to Mutual Information for the Hierarchical Clustering of Dependent Random Variables

    Marrelec, G., Messé, A. & Bellec, P., 2015, In: PLOS ONE. 10, 9, p. e0137278

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  27. Simulation of spatiotemporal CT data sets using a 4D MRI-based lung motion model

    Marx, M., Ehrhardt, J., Werner, R., Schlemmer, H-P. & Handels, H., 2014, In: INT J COMPUT ASS RAD. 9, 3, p. 401-9 9 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  28. Resting State Networks' Corticotopy: The Dual Intertwined Rings Architecture

    Mesmoudi, S., Perlbarg, V., Rudrauf, D., Messe, A., Pinsard, B., Hasboun, D., Cioli, C., Marrelec, G., Toro, R., Benali, H. & Burnod, Y., 24.07.2013, In: PLOS ONE. 8, 7, e67444.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  29. A closer look at the apparent correlation of structural and functional connectivity in excitable neural networks

    Messé, A., Hütt, M-T., König, P. & Hilgetag, C. C., 19.01.2015, In: SCI REP-UK. 5, p. Art. 7870

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  30. Predicting functional connectivity from structural connectivity via computational models using MRI: An extensive comparison study

    Messé, A., Rudrauf, D., Giron, A. & Marrelec, G., 01.05.2015, In: NEUROIMAGE. 111, p. 65-75 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  31. Relating structural and functional connectivity in MRI: a simple model for a complex brain

    Messé, A., Benali, H. & Marrelec, G., 01.2015, In: IEEE T MED IMAGING. 34, 1, p. 27-37 11 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  32. Toward a theory of coactivation patterns in excitable neural networks

    Messé, A., Hütt, M-T. & Hilgetag, C. C., 09.04.2018, In: PLOS COMPUT BIOL. 14, 4, p. e1006084

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  33. Parcellation influence on the connectivity-based structure-function relationship in the human brain

    Messé, A., 01.04.2020, In: HUM BRAIN MAPP. 41, 5, p. 1167-1180 14 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  34. Relating Structure and Function in the Human Brain: Relative Contributions of Anatomy, Stationary Dynamics, and Non-stationarities

    Messé, A., Rudrauf, D., Benali, H. & Marrelec, G., 03.2014, In: PLOS COMPUT BIOL. 10, 3, e1003530.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  35. Specific and Evolving Resting-State Network Alterations in Post-Concussion Syndrome Following Mild Traumatic Brain Injury

    Messé, A., Caplain, S., Pélégrini-Issac, M., Blancho, S., Lévy, R., Aghakhani, N., Montreuil, M., Benali, H. & Lehéricy, S., 06.06.2013, In: PLOS ONE. 8, 6, e65470.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  36. Structural basis of envelope and phase intrinsic coupling modes in the cerebral cortex

    Messé, A., Hollensteiner, K. J., Delettre, C., Dell-Brown, L-A., Pieper, F., Nentwig, L. J., Galindo-Leon, E. E., Larrat, B., Mériaux, S., Mangin, J-F., Reillo, I., Juan Romero, C. D., Borrell, V., Engler, G., Toro, R., Engel, A. K. & Hilgetag, C. C., 01.08.2023, In: NEUROIMAGE. 276, 120212.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  37. Deep Image Prior for Spatio-temporal Fluorescence Microscopy Images: DECO-DIP

    Meyer, L., Woelk, L-M., Gee, C., Lohr, C., Arcot Kannabiran, S., Diercks, B-P. & Werner, R., 2024, Bildverarbeitung für die Medizin 2024: Proceedings, German Conference on Medical Image Computing, Erlangen, March 10–12, 2024. Maier, A., Deserno, TM., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, TM. (eds.). 1 ed. Springer Vieweg, p. 322-327 6 p. (Informatik Aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  38. Decision Forests with Spatio-temporal Features for Graph-based Tumour Segmentation in 4D Lung CT

    Mirzaei, H., Tang, L., Werner, R. & Hamarneh, G., 2013, Machine Learning in Medical Imaging. Wu, G., Zhang, D., Shen, D., Yan, P., Suzuki, K. & Wang, F. (eds.). 1 ed. Springer, Vol. 8184. p. 179-186 8 p. (Lecture Notes in Computer Science).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  39. Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT

    Mogadas, N., Sothmann, T. & Werner, R., 2018, Bildverarbeitung für die Medizin: Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 11. bis 13. März 2018 in Erlangen. Maier, A., Deserno, T., Handels, H., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). 1 ed. Springer Vieweg, p. 188-193 6 p.

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  40. Influence of deformable image registration on 4D dose simulation for extracranial SBRT: A multi-registration framework study

    Mogadas, N., Sothmann, T., Knopp, T., Gauer, T., Petersen, C. & Werner, R., 05.2018, In: RADIOTHER ONCOL. 127, 2, p. 225-232 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  41. Simulation of neuroplasticity in a CNN-based in-silico model of neurodegeneration of the visual system

    Moore, J. A., Wilms, M., Gutierrez, A., Ismail, Z., Fakhar, K., Hadaeghi, F., Hilgetag, C. C. & Forkert, N. D., 2023, In: FRONT COMPUT NEUROSC. 17, p. 1274824

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  42. Self-reference-based and during-registration detection of motion artifacts in spatio-temporal image data

    Mücke, E., Handels, H. & Werner, R., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). 1 ed. SPIE , Vol. 10574. p. 10574-1 - 10574-7 7 p. (Proceedings of SPIE).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  43. Evaluation of different magnetic resonance imaging techniques for the assessment of active left atrial emptying

    Muellerleile, K., Groth, M., Saring, D., Steven, D., Sultan, A., Drewitz, I., Hoffmann, B., Lueker, J., Adam, G., Lund, G. K., Willems, S. & Rostock, T., 09.2012, In: EUR RADIOL. 22, 9, p. 1904-1911 8 p., 9.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  44. Cardiovascular magnetic resonance demonstrates reversible atrial dysfunction after catheter ablation of persistent atrial fibrillation

    Müllerleile, K., Groth, M., Steven, D., Hoffmann, B. A., Säring, D., Radunski, U. K., Lund, G. K., Adam, G., Rostock, T. & Willems, S., 01.07.2013, In: J CARDIOVASC ELECTR. 24, 7, p. 762-7 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  45. Organization of excitable dynamics in hierarchical biological networks

    Müller-Linow, M., Hilgetag, C. C. & Hütt, M-T., 26.09.2008, In: PLOS COMPUT BIOL. 4, 9, p. e1000190

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  46. Serum Matrix Metalloproteinases as Quantitative Biomarkers for Myocardial Fibrosis and Sudden Cardiac Death Risk Stratification in Patients With Hypertrophic Cardiomyopathy

    Münch, J., Avanesov, M., Bannas, P., Säring, D., Krämer, E., Mearini, G., Carrier, L., Suling, A., Lund, G. & Patten-Hamel, M., 10.2016, In: J CARD FAIL. 22, 10, p. 845-50 6 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  47. Cortical thickness and cognitive performance in asymptomatic unilateral carotid artery stenosis

    Nickel, A., Kessner, S., Niebuhr, A., Schröder, J., Malherbe, C., Fischer, F., Heinze, M., Cheng, B., Fiehler, J., Pinnschmidt, H., Larena-Avellaneda, A., Gerloff, C. & Thomalla, G., 25.06.2019, In: BMC CARDIOVASC DISOR. 19, 1, p. 154

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

  48. Machbarkeitsstudie zur CNN-basierten Identifikation und TICI-Klassifizierung zerebraler ischämischer Infarkte in DSA-Daten

    Nielsen, M., Waldmann, M., Frölich, A., Fiehler, J. & Werner, R., 07.02.2019, Bildverarbeitung für die Medizin 2019: Algorithmen – Systeme – Anwendungen. Proceedings des Workshops vom 17. bis 19. März 2019 in Lübeck. 1 ed. Springer Vieweg, p. 200-205 6 p. (Informatik aktuell).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  49. Time Matters: Handling Spatio-Temporal Perfusion Information for Automated TICI Scoring

    Nielsen, M., Waldmann, M., Sentker, T., Frölich, A., Fiehler, J. & Werner, R., 10.2020, MICCAI 2020. 1 ed. Springer Nature Switzerland, Vol. 12266. p. 86-96 11 p. (Lecture Notes in Computer Science (LNCS)).

    Research output: SCORING: Contribution to book/anthology › SCORING: Contribution to collected editions/anthologies › Research › peer-review

  50. Deep Learning-Based Automated Thrombolysis in Cerebral Infarction Scoring: A Timely Proof-of-Principle Study

    Nielsen, M., Waldmann, M., Frölich, A. M., Flottmann, F., Hristova, E., Bendszus, M., Seker, F., Fiehler, J., Sentker, T. & Werner, R., 11.2021, In: STROKE. 52, 11, p. 3497-3504 8 p.

    Research output: SCORING: Contribution to journal › SCORING: Journal article › Research › peer-review

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