Brain simulation as a cloud service: The Virtual Brain on EBRAINS

  • Michael Schirner
  • Lia Domide
  • Dionysios Perdikis
  • Paul Triebkorn
  • Leon Stefanovski
  • Roopa Pai
  • Paula Prodan
  • Bogdan Valean
  • Jessica Palmer
  • Chloê Langford
  • André Blickensdörfer
  • Michiel van der Vlag
  • Sandra Diaz-Pier
  • Alexander Peyser
  • Wouter Klijn
  • Dirk Pleiter
  • Anne Nahm
  • Oliver Schmid
  • Marmaduke Woodman
  • Lyuba Zehl
  • Jan Fousek
  • Spase Petkoski
  • Lionel Kusch
  • Meysam Hashemi
  • Daniele Marinazzo
  • Jean-François Mangin
  • Agnes Flöel
  • Simisola Akintoye
  • Bernd Carsten Stahl
  • Michael Cepic
  • Emily Johnson
  • Gustavo Deco
  • Anthony R McIntosh
  • Claus C Hilgetag
  • Marc Morgan
  • Bernd Schuller
  • Alex Upton
  • Colin McMurtrie
  • Timo Dickscheid
  • Jan G Bjaalie
  • Katrin Amunts
  • Jochen Mersmann
  • Viktor Jirsa
  • Petra Ritter

Abstract

The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS (ebrains.eu). It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.

Bibliografische Daten

OriginalspracheEnglisch
Aufsatznummer118973
ISSN1053-8119
DOIs
StatusVeröffentlicht - 01.05.2022

Anmerkungen des Dekanats

Copyright © 2022. Published by Elsevier Inc.

PubMed 35131433