Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations.

  • Markus Weingarth
  • Christian Ader
  • Adrien S J Melquiond
  • Deepak Nand
  • Olaf Pongs
  • Stefan Becker
  • Alexandre M J J Bonvin
  • Marc Baldus

Abstract

Elemental biological functions such as molecular signal transduction are determined by the dynamic interplay between polypeptides and the membrane environment. Determining such supramolecular arrangements poses a significant challenge for classical structural biology methods. We introduce an iterative approach that combines magic-angle spinning solid-state NMR spectroscopy and atomistic molecular dynamics simulations for the determination of the structure and topology of membrane-bound systems with a resolution and level of accuracy difficult to obtain by either method alone. Our study focuses on the Shaker B ball peptide that is representative for rapid N-type inactivating domains of voltage-gated K(+) channels, associated with negatively charged lipid bilayers.

Bibliografische Daten

OriginalspracheEnglisch
Aufsatznummer1
ISSN0006-3495
StatusVeröffentlicht - 2012
pubmed 22828329